PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g07160.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 350aa    MW: 39790 Da    PI: 7.8511
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g07160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-1752102155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr++  + +Wv+e+r+p   +k+ r++lg+f t+e+Aa+a++ a+ +l+g
  Vradi01g07160.1  52 PVYRGVRRRN-SDKWVCEVREP---NKKSRIWLGTFPTPEMAARAHDVAAMALRG 102
                      68*****888.8******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-1352102IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-2153112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-3053112IPR001471AP2/ERF domain
SMARTSM003803.0E-2753116IPR001471AP2/ERF domain
PROSITE profilePS5103221.6853110IPR001471AP2/ERF domain
PRINTSPR003671.9E-75465IPR001471AP2/ERF domain
CDDcd000181.75E-2854112No hitNo description
PRINTSPR003671.9E-77692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MFGFYHLSSQ LSPSFDSSSP PSVAFSDQEL LLAVRHPKKR AGRKKFRETR HPVYRGVRRR  60
NSDKWVCEVR EPNKKSRIWL GTFPTPEMAA RAHDVAAMAL RGRYACLNFA DSRWRLPAPA  120
SASAKDIQKA AAEAAEAFRP DQSSENSNTT QECLEEVTKT RMEQGVFYME EDQEEQVVDI  180
PEQLRNMVLM SPSHCLGYEY EDADLEAHQD TEVNLKVHKT EMADISCFAK CKMGPSQTET  240
TLYPQKYFKC KAALKKADKN QSHCPDLSWI ESTYSNGNLL MKAQRRNKFA NMVVLRRDWV  300
DGFELLGHVN GKMNSQRHRE QCCFCGFFGF DLMYISDRVD DGGSAFCGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-12511091271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g07160.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503472.11e-158dehydration-responsive element-binding protein 1D
SwissprotQ9FJ931e-60DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A1S3UBR81e-156A0A1S3UBR8_VIGRR; dehydration-responsive element-binding protein 1D
STRINGXP_007152343.11e-120(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-44C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]