PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g04670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 221aa MW: 24607.8 Da PI: 3.9729 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27 | 1.1e-08 | 20 | 68 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrw 44 rg+W+ eEd+ll ++++ +G g+W+++a + g kg+ c ++ Vradi01g04670.1 20 RGPWSIEEDDLLGNYIANHGEGRWNLVAIRAGfveffKGLQMTRCLHKA 68 89****************************9998888888777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-9 | 14 | 49 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.306 | 15 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.79E-7 | 16 | 51 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.5E-7 | 20 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00151 | 22 | 47 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSTSSKSIIC YSEEDTELRR GPWSIEEDDL LGNYIANHGE GRWNLVAIRA GFVEFFKGLQ 60 MTRCLHKAQE SSPSAMSLQD QEIPMPSDGG SHYSSFGIEA TPETQHLNQH EQNSDSEHNN 120 GSSISNSESV NIQYMTQPLG CTTNQFQALD NYDFGICSYD SYNIDNSAYD MDSFNLAATM 180 DAQNLTLPVI GCQISETNSL NMESECSTRS NDELWQFMNI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g04670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-171 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014494335.1 | 1e-123 | myb-related protein 305-like | ||||
TrEMBL | A0A1S3TKQ1 | 1e-121 | A0A1S3TKQ1_VIGRR; myb-related protein 305-like | ||||
STRING | XP_007154150.1 | 6e-83 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1639 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 8e-12 | myb domain protein 62 |