PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g04530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 207aa MW: 23295.9 Da PI: 4.2264 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52 | 1.8e-16 | 8 | 55 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ykGV ++k +g++vAeIrdp + r++lg+f+t++eAa a+++ ++++e Vradi01g04530.1 8 YKGVQRRK-WGKYVAEIRDPI----QgVRVWLGTFDTEQEAAMAYERKKNEFE 55 9***8887.**********82....36**********99**********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.68E-21 | 6 | 49 | No hit | No description |
SuperFamily | SSF54171 | 1.63E-16 | 6 | 54 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.057 | 7 | 66 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-16 | 7 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-21 | 7 | 57 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-10 | 8 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-9 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-9 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MRKPSSMYKG VQRRKWGKYV AEIRDPIQGV RVWLGTFDTE QEAAMAYERK KNEFERSRKR 60 DAVAFDSSKE VLFHASPSSV LDVCTTKASL DVSDLNDSVK EKFNVEKVGE GGGNDVEAVN 120 SEDNSTQLLL EEPVMPSLFG YDGFCLDEAE KRGILLDEEC YNFLDNDIKG GFMWNVEHGD 180 TTVLPPVDSA FDELAWIDET LDWESS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g04530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014494298.1 | 1e-152 | ethylene-responsive transcription factor ERF118-like | ||||
Refseq | XP_022639029.1 | 1e-152 | ethylene-responsive transcription factor ERF118-like | ||||
Refseq | XP_022639036.1 | 1e-152 | ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | A0A1S3TKK2 | 1e-150 | A0A1S3TKK2_VIGRR; ethylene-responsive transcription factor ERF118-like | ||||
STRING | XP_007152764.1 | 1e-106 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15981 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 1e-18 | ERF family protein |