PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi01g03150.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HRT-like

Protein Properties

Length: 371aa MW: 40957.2 Da PI: 9.804

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g03150.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	56.3	5.4e-18	204	233	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCGv+l+dG +C+r+Pv++R RC eHKGmR Vradi01g03150.1 204 ICGVALGDGLICRRPPVEKRLRCPEHKGMR 233 8****************************9 PP
2	HRT-like	62.6	5.7e-20	263	293	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il+dGs+C+r+Pv+gRKRC+eHKGmRi Vradi01g03150.1 263 ICGIILNDGSTCRRKPVQGRKRCHEHKGMRI 293 8*****************************7 PP
3	HRT-like	62.2	7.5e-20	335	365	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il+dGs C+rqPvkgRKRC+eHKG+Ri Vradi01g03150.1 335 ICGIILSDGSACTRQPVKGRKRCHEHKGRRI 365 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MAALVNSRLK REQCNRTKHD SSFSHWKILI GPSDWEDHSK GKEGCPRYRI HNLPEESNPG 60 VYELGIAVSN GGLGREISKL TPHSHRILVV YLGQADNVRT RLQRYGRTGA HLQSGCSNGS 120 SSQEGRPLFE EVFSQGFSIV YRWAPKQVGI RIKSSKLAQA DDKLDEADNG SYNFLSRVFS 180 FNRSRPRIVQ STSGVVQEQE NAKICGVALG DGLICRRPPV EKRLRCPEHK GMRANVSIAE 240 SESNVSQTVV GSPVDESLTD TNICGIILND GSTCRRKPVQ GRKRCHEHKG MRIGASVQKK 300 GNGGYRYQNG SHVVEDCLQT LVGNPVDESI SNTNICGIIL SDGSACTRQP VKGRKRCHEH 360 KGRRIHASFM *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MAALVNSRLK REQCNRTKHD SSFSHWKILI GPSDWEDHSK GKEGCPRYRI HNLPEESNPG  60
VYELGIAVSN GGLGREISKL TPHSHRILVV YLGQADNVRT RLQRYGRTGA HLQSGCSNGS  120
SSQEGRPLFE EVFSQGFSIV YRWAPKQVGI RIKSSKLAQA DDKLDEADNG SYNFLSRVFS  180
FNRSRPRIVQ STSGVVQEQE NAKICGVALG DGLICRRPPV EKRLRCPEHK GMRANVSIAE  240
SESNVSQTVV GSPVDESLTD TNICGIILND GSTCRRKPVQ GRKRCHEHKG MRIGASVQKK  300
GNGGYRYQNG SHVVEDCLQT LVGNPVDESI SNTNICGIIL SDGSACTRQP VKGRKRCHEH  360
KGRRIHASFM *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g03150.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	1e-171	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014511139.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A1S3UZ06	0.0	A0A1S3UZ06_VIGRR; protein EFFECTOR OF TRANSCRIPTION 2
STRING	XP_007152922.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	8e-61	effector of transcription2