PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi01g01860.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 335aa MW: 38201.6 Da PI: 5.966

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g01860.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180	6.1e-56	22	148	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL +kv ++ + ++i e+d++k+ePwdLp ++k +ekewyfFs rd+ky+tg+r+nrat +gyWkatgkdke+++ Vradi01g01860.1 22 LPPGFRFHPTDEELITHYLSQKVLDNCFCS-RAIGEADLNKCEPWDLPCMAKMGEKEWYFFSVRDRKYPTGQRTNRATGAGYWKATGKDKEIYK 114 79**********************9877.89***********8888899*********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++l+g+kktLvfykgrap+gekt+Wvmheyrle Vradi01g01860.1 115 -ARTLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLE 148 .899***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-63	15	172	IPR003441	NAC domain
PROSITE profile	PS51005	58.991	22	172	IPR003441	NAC domain
Pfam	PF02365	6.5E-30	23	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MDAMENYYYS QRDTMAEEAF DLPPGFRFHP TDEELITHYL SQKVLDNCFC SRAIGEADLN 60 KCEPWDLPCM AKMGEKEWYF FSVRDRKYPT GQRTNRATGA GYWKATGKDK EIYKARTLIG 120 MKKTLVFYKG RAPSGEKTNW VMHEYRLEDH HSMHNPHKKA MNDWAICRIF EKTNCGKKMQ 180 ISGLVRLSSF GKEMPSLMDS SPYNTTEAKP VLGESSQFSS DRNQSDENIA ESLETLMMAS 240 SSSYSSNPFD VSPASWSVPH QSLQAGNSNY SMDEEQQSML GMVIENHGSS TTLRTHKALN 300 NDFDADTSSF IYNDEIFHRS FGNQEYSSPS LWGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-56	20	178	18	174	NAC domain-containing protein 19
3swm_B	3e-56	20	178	18	174	NAC domain-containing protein 19
3swm_C	3e-56	20	178	18	174	NAC domain-containing protein 19
3swm_D	3e-56	20	178	18	174	NAC domain-containing protein 19
3swp_A	3e-56	20	178	18	174	NAC domain-containing protein 19
3swp_B	3e-56	20	178	18	174	NAC domain-containing protein 19
3swp_C	3e-56	20	178	18	174	NAC domain-containing protein 19
3swp_D	3e-56	20	178	18	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g01860.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014509002.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-106	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3USQ0	0.0	A0A1S3USQ0_VIGRR; NAC domain-containing protein 100
STRING	XP_007151241.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-107	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]