PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0194s00140.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 422aa MW: 45730.8 Da PI: 10.5606

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0194s00140.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	56.7	9.8e-18	191	229	2	40
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLG 40 + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eL Vradi0194s00140.1 191 PQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELD 229 57999********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-13	196	228	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	9.294	197	228	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MNEPSKNNKL RCCGLLCVDE GEYGYERETD WISEENGLEL VSVSDFFNWD HRDDRKKVEK 60 EEAWVLVNTQ IGTREGPIIR SERGAGATKP GRAMGLFASG WWAPCGGRGT IQLGDGGSHW 120 GQSRCRGSGQ RRDSDFQDKV CGLWAHLLMG PKVEPETEEA SAIRVMPVAV HVPSGMSMSV 180 SKALAQAQAQ PQKRASTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELDP PERKKRKRPA 240 NSAYVDVNDG AVSVPAGLAS SNKQSSRTIT TTASTTTTIP QHTAIPLPQG VVPVWAVPSN 300 AVVPTAGAFF VVPQAASFQH HPQFFTIARP ISAFVSSMVT PVQLQPTSTS SSANANPSST 360 APSSKSPARA TRWDPKGRIV RVMGGPYGTV YAPFSSRPFQ SGPSVARKSR RLRVALCLVD 420 R*

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MNEPSKNNKL RCCGLLCVDE GEYGYERETD WISEENGLEL VSVSDFFNWD HRDDRKKVEK  60
EEAWVLVNTQ IGTREGPIIR SERGAGATKP GRAMGLFASG WWAPCGGRGT IQLGDGGSHW  120
GQSRCRGSGQ RRDSDFQDKV CGLWAHLLMG PKVEPETEEA SAIRVMPVAV HVPSGMSMSV  180
SKALAQAQAQ PQKRASTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELDP PERKKRKRPA  240
NSAYVDVNDG AVSVPAGLAS SNKQSSRTIT TTASTTTTIP QHTAIPLPQG VVPVWAVPSN  300
AVVPTAGAFF VVPQAASFQH HPQFFTIARP ISAFVSSMVT PVQLQPTSTS SSANANPSST  360
APSSKSPARA TRWDPKGRIV RVMGGPYGTV YAPFSSRPFQ SGPSVARKSR RLRVALCLVD  420
R*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	238	ERKKRKRP
2	232	237	RKKRKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0194s00140.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014522942.1	1e-114	transcription factor TCP9
TrEMBL	A0A1S3VXL3	1e-113	A0A1S3VXL3_VIGRR; transcription factor TCP9
STRING	XP_007134948.1	1e-100	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-30	TCP family protein