PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0190s00290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 193aa MW: 21689.5 Da PI: 5.7883 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.1 | 2.7e-24 | 9 | 54 | 6 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++ rqvtfskRr+g+ KKA+E+SvLCda+va+i+f +gkl+eyss Vradi0190s00290.1 9 TTSRQVTFSKRRTGLRKKAHEISVLCDAQVALIVFNAKGKLFEYSS 54 689*****************************************96 PP | |||||||
2 | K-box | 78 | 2.4e-26 | 87 | 160 | 16 | 89 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 +++ + kL ++e L++++R+++G+dL++Lsl+eLq+Le+qL++++k+iR++Kn+++ e+i++lqkk + ++ Vradi0190s00290.1 87 NWSLQCFKLTGKVEVLEKNLRNFVGQDLDPLSLRELQSLEHQLDTAIKRIRTRKNQVMNESISDLQKKVRGENS 160 7888999*************************************************************986555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.932 | 7 | 56 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-22 | 8 | 64 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.7E-20 | 9 | 55 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-21 | 10 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-16 | 18 | 33 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-16 | 33 | 54 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.447 | 85 | 172 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.8E-21 | 87 | 156 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
SACVEADPTT SRQVTFSKRR TGLRKKAHEI SVLCDAQVAL IVFNAKGKLF EYSSESRYPS 60 NDLEELQQED LELKTTYGPF DNLLTGNWSL QCFKLTGKVE VLEKNLRNFV GQDLDPLSLR 120 ELQSLEHQLD TAIKRIRTRK NQVMNESISD LQKKVRGENS EAVGAVEEMD EGGAVPSTTT 180 LIPSWMLHQF AR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0190s00290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-59 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014522860.1 | 1e-93 | truncated transcription factor CAULIFLOWER A-like | ||||
Refseq | XP_022632265.1 | 1e-93 | truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | D7SMN6 | 4e-59 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A1S3VX21 | 3e-92 | A0A1S3VX21_VIGRR; truncated transcription factor CAULIFLOWER A-like | ||||
STRING | GLYMA13G06811.1 | 2e-73 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 2e-52 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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