PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0183s00290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 327aa MW: 36362.4 Da PI: 4.6098 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 91 | 141 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g Vradi0183s00290.1 91 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIRLRG 141 59********.**********82....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.12E-32 | 91 | 148 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.9E-30 | 92 | 149 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.2E-13 | 92 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.591 | 92 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-21 | 92 | 149 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.2E-38 | 92 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 93 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGKGRLLLPK KSQTNSNTDR RVVRISYTDP DATDSSGDDE PFPFARQRIK RYVNHIQIQT 60 ATTTAPSVLP NARKRPAAEP CRRQVKLHSG KKFRGVRQRP WGKWAAEIRD PARRVRLWLG 120 TYDTAEEAAM VYDNAAIRLR GPDALTNFVT PPQKEPPPAA AAEVPELKVG VGEEASGSGY 180 DSGDDHCHHN LSSPTSVLHF RSNSSEENSE KAEEGLRECQ GETETSWLDE KGEFMALENL 240 PEWNDVFNFE APEYPLVFEE EHVVDESQML GETMAFSPGE AFSDTSSILL ADSLIDFDKA 300 CSPSTFCQVD DYFQDILLAS DPLVLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 90 | 148 | 3 | 62 | ATERF1 |
3gcc_A | 3e-21 | 90 | 148 | 3 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0183s00290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014522366.1 | 0.0 | ethylene-responsive transcription factor CRF1 | ||||
Swissprot | Q9SUE3 | 1e-51 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A1S3VVF6 | 0.0 | A0A1S3VVF6_VIGRR; ethylene-responsive transcription factor CRF1 | ||||
STRING | XP_007137563.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-48 | cytokinin response factor 4 |
Publications ? help Back to Top | |||
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