PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0179s00190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 148aa MW: 16454.9 Da PI: 4.4135 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 8.8e-09 | 14 | 44 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g+WT+ Ed ll ++++ +G g+Wk+ +++ Vradi0179s00190.1 14 KGPWTPKEDALLTKYIQAHGEGQWKSLPKKA 44 79************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-11 | 5 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.44E-7 | 8 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.702 | 9 | 49 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.2E-6 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.42E-5 | 16 | 43 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MGRAPCCSKV GLHKGPWTPK EDALLTKYIQ AHGEGQWKSL PKKADSNNTY TFDSNSASAS 60 TNQEKEESPL TKESNLASEF GNVGESDDFG FFSEDHDLVN ASDMECHSYF PSDHGSLQQL 120 YEEYYHLLNM DHSQFIEMSS FGESLLV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0179s00190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 1e-146 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014524093.1 | 1e-67 | transcription repressor MYB6 | ||||
TrEMBL | A0A1S3W0A3 | 2e-66 | A0A1S3W0A3_VIGRR; transcription repressor MYB6 | ||||
STRING | XP_007135274.1 | 1e-53 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF27147 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 2e-19 | myb domain protein 111 |