PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0161s00040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 403aa    MW: 45594.6 Da    PI: 4.8981
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0161s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.1e-34141052102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl k+ye+++d+++++++sws++++sfvv+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +l
  Vradi0161s00040.1  14 FLAKTYEMVDDPSTNSIVSWSASSKSFVVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFVRGQPHL 96 
                        9***************************************************************9998.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        +++i+r+k 
  Vradi0161s00040.1  97 MKNIHRRKP 105
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.08E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-6310103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.3E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDEALGSSCS LPPFLAKTYE MVDDPSTNSI VSWSASSKSF VVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFV RGQPHLMKNI HRRKPVHSHS LQNLQAQGPL  120
GESERQSFTN EIEKLKHDRE RLLAELQKFQ HEWQTYEIQV HCSNDRLEKL EQKQQKMVSS  180
VSHVLQKPVI AVNILPLTET MDRKRRLPRS GHYYEEASIE DAIETSQMLP RENADNTTVL  240
TLNVERLDQL ESSVAFWEAI AHDIGDNFAQ IQSNMDVDES TSCADSPSIS CAQLDVEIRP  300
KSSGIDMNSE PTAAAVPDPV ASKDQPAGIT VAATGVNDVF WEQFLTEDPG ASETQEVQSE  360
RKDSDGRKNE GKPNDLSKFW WNIRSANNHA EPMGHVGQAE KT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-24110312129Heat shock factor protein 1
5d5v_B7e-24110312129Heat shock factor protein 1
5d5v_D7e-24110312129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0161s00040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526270.0AY052627.1 Phaseolus acutifolius heat shock transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523429.10.0heat stress transcription factor A-4c
SwissprotO494031e-121HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A1S3VZF70.0A0A1S3VZF7_VIGRR; heat stress transcription factor A-4c
STRINGXP_007159491.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-123heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]