PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0160s00310.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 308aa MW: 35263.3 Da PI: 9.6206

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0160s00310.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.6	1.2e-21	42	100	1	59
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnk 59 rW+k+e++aL+++r++m+ ++r+++ k+plW++vskk++e g++rs+k+Ckek+en+ + Vradi0160s00310.1 42 RWPKEETMALLKIRSDMDVAFRDTNPKAPLWDQVSKKLAELGYSRSSKKCKEKFENIYN 100 8*******************************************************976 PP
2	trihelix	88.5	7.6e-28	198	284	5	86
trihelix 5 qevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +ev aLi++r+e++ +++ ++ +k+plWe++s++m+ g+ers+k+Ckekwen+nk++k++ke +k++ +++s+tcpy+++le Vradi0160s00310.1 198 DEVEALIRLRTELDVQSQGNNnssngvSKGPLWEDISSAMKGLGYERSAKRCKEKWENINKYFKRMKEKNKRK-PQDSKTCPYYHHLE 284 79*******9999988544445666****************************************96.9*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.561	35	99	IPR017877	Myb-like domain
SMART	SM00717	6.2E-4	39	101	IPR001005	SANT/Myb domain
Pfam	PF13837	1.6E-13	41	100	No hit	No description
CDD	cd12203	4.70E-18	41	98	No hit	No description
SMART	SM00717	0.14	151	259	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-4	155	170	IPR009057	Homeodomain-like
Pfam	PF13837	3.5E-19	198	284	No hit	No description
CDD	cd12203	1.99E-17	198	264	No hit	No description
PROSITE profile	PS50090	5.982	198	257	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	6.2E-4	227	256	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MLEVSASPET PLANPEGGAA AVSEGLKAED GEAGDRNSAA SRWPKEETMA LLKIRSDMDV 60 AFRDTNPKAP LWDQVSKKLA ELGYSRSSKK CKEKFENIYN STTSCSGKGF RKRKLTQFLE 120 GLMREVIEKQ ETLQRKFVEV LEKCEKDRMA REEAWKKEEL ALIKKERELL AQERSIAAAK 180 DEVVLAFLRK FTQAEGMDEV EALIRLRTEL DVQSQGNNNS SNGVSKGPLW EDISSAMKGL 240 GYERSAKRCK EKWENINKYF KRMKEKNKRK PQDSKTCPYY HHLEVLYSKK PKRVDNSWEF 300 MAKTILY*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0160s00310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-147	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020212111.1	1e-124	trihelix transcription factor GT-2
Swissprot	Q39117	3e-45	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A371EMQ7	1e-124	A0A371EMQ7_MUCPR; Trihelix transcription factor GT-2
STRING	GLYMA09G19750.2	1e-104	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	7e-38	Trihelix family protein