PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0158s00460.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 236aa    MW: 26581.3 Da    PI: 8.318
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0158s00460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.11.4e-151051243
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                       +i  +s+r+ tf kR+ng++KK  E+S+LC+++++ ii+ ++
  Vradi0158s00460.1 10 FITKTSKRKATFKKRKNGLIKKIGEISILCGIQACAIIYTPD 51
                       68899**********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-16161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.596149IPR002100Transcription factor, MADS-box
CDDcd002669.47E-27284No hitNo description
SuperFamilySSF554552.88E-21396IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-8323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-151051IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MARKKVDLTF ITKTSKRKAT FKKRKNGLIK KIGEISILCG IQACAIIYTP DEPEQPEVWP  60
SEEGVESAIT RFRSVSELEQ SKKMFCQESF LRQRIVKVQE QLKKVRNENR KKEINHLISQ  120
YITVGNNHLE TANLIDLNDI SFLADQCLED ITKKIAARKA QMGAPVTENN GGETVTRHGE  180
QARVNHVQVQ GPYTDVDAMQ NINWSADIIN AAAPNDMLSL DDVNVQSGWL NQYIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVDLTFITKTSKRKATFKKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0158s00460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014489618.21e-176agamous-like MADS-box protein AGL80
TrEMBLA0A1S3T7791e-174A0A1S3T779_VIGRR; agamous-like MADS-box protein AGL80
STRINGXP_007146875.11e-151(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-43AGAMOUS-like 80