PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0158s00200.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 417aa    MW: 46570.5 Da    PI: 8.6021
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0158s00200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-07353381129
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                        + rW+  E+e l  +vk++G g+W+tI +
  Vradi0158s00200.1 353 KRRWSSLEEETLRAGVKMFGEGNWATIKS 381
                        579************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-8347390IPR009057Homeodomain-like
PROSITE profilePS500906.168348393IPR017877Myb-like domain
SuperFamilySSF466894.37E-8350392IPR009057Homeodomain-like
CDDcd116601.05E-7356393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDTDISRWVT EFLLRSSVPD SLIRKALIVL PLSGADSRFK KTLLLRTLRT LLLKASLSET  60
ALQILEHLEE LDGVSTSVAL RRAYLAVAVE CTVKYLAAAP DDPEGEFSGA VKRIWRGRVA  120
ALEARRSGLV SGELVRWRDD VEAALGDSRA CERLADFNSR REAMKEKIEA NQEVGGRDLL  180
LQGDKVIQKR NLRVKHKHSA LRACHRGVKI NGSEEVESAK SLSKHDSVPS SEVKKVRESL  240
KSSSYDLRAL VKDPLPDALH LSEAVRSKLA NSDTNIEPPI EKQSPDVDVP DPNVCQSIVL  300
FQSNDANLGK ESSVHSSDLH QPNLMERNRS AQTFEWDDSI DNSPQARQTR RRKRRWSSLE  360
EETLRAGVKM FGEGNWATIK SFYSNIFDNR SGDYNNVPPT KRFPSGSAKD EVNFEV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0158s00200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027932123.10.0uncharacterized protein LOC114187915 isoform X1
RefseqXP_027932124.10.0uncharacterized protein LOC114187915 isoform X1
RefseqXP_027932126.10.0uncharacterized protein LOC114187915 isoform X1
RefseqXP_027932127.10.0uncharacterized protein LOC114187915 isoform X1
RefseqXP_027932128.10.0uncharacterized protein LOC114187915 isoform X1
RefseqXP_027932129.10.0uncharacterized protein LOC114187915 isoform X1
TrEMBLA0A4D6KW590.0A0A4D6KW59_VIGUN; Telomeric repeat-binding factor 2
STRINGXP_007146880.11e-179(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.12e-10TRF-like 7