PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0146s00200.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 587aa MW: 65167.5 Da PI: 6.01

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0146s00200.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	436.7	1.8e-133	227	585	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 lv+lLl+cAeav++++ la+++L +l+ ++p gd+mqR+aa+ft L+arl+ + + p+++ s++ns e+l+++++ ++++P++k Vradi0146s00200.1 227 LVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVAACFTDSLSARLNA----TLSPKPSKSLSPSNSMEVLKIYQIVYQACPYVK 314 68**************************************************9....777778888888999************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 f+h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp +p lRiTgvg+ s ++++etg+ L+++A++l++pfef++ v + Vradi0146s00200.1 315 FAHFTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPTTAPFLRITGVGP----SIDAVRETGRCLTELAHSLRIPFEFHA-VGE 401 *****************************************************....9**********************.7 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 +ledl++++L+ + gEalaVn v +lhr++ ++ ++L ++++ P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p Vradi0146s00200.1 402 QLEDLKPHMLHRRVGEALAVNAVNRLHRVP------GNHLGNLLTMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFP 487 ***************************9......444557********************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368 ++s +r+kvE+ ++++ei+n+v+ceg er+erhe+lekWr+ +e GFk+v+ls +a++q k ll ++ +gyr+ e++g+l+lgW+dr++v Vradi0146s00200.1 488 ADSAQRAKVEQYIFAPEIRNIVSCEGPERFERHERLEKWRKIMEGKGFKSVALSPNAVTQSKILLGLYSCEGYRLTEDKGCLLLGWQDRAIV 579 **************************************************************************************** PP GRAS 369 svSaWr 374 ++SaWr Vradi0146s00200.1 580 AASAWR 585 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.89	201	565	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.1E-131	227	585	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MINSLCGTLK SENNSRTKLQ PTSSNDSKKN ATQSSGDLDQ TGLTPPSLNL PALKFDLDGD 60 VEVQSPDNSL WESFFADQLD ADFMISSPVR NLPSPQLSSY NCSYNYAHGM QTQSLSGCSP 120 PKFSSSFNSS HKGKGLSPLH RVFNSPNNQY MQHVENLSLP AIEEFLEDYQ GYSSTKVSSD 180 IATSSECFDL STQIPSSLLD TLTLPDSSRY HGSVDEESSE QDSGLQLVHL LLACAEAVAK 240 EEYMLARRYL HHLNRVVTPL GDSMQRVAAC FTDSLSARLN ATLSPKPSKS LSPSNSMEVL 300 KIYQIVYQAC PYVKFAHFTA NQAIFEAFET EERVHVIDLD ILQGYQWPAF MQALAARPTT 360 APFLRITGVG PSIDAVRETG RCLTELAHSL RIPFEFHAVG EQLEDLKPHM LHRRVGEALA 420 VNAVNRLHRV PGNHLGNLLT MIRDQAPNIV TLVEQEASHN GPYFLGRFLE ALHYYSAIFD 480 SLDATFPADS AQRAKVEQYI FAPEIRNIVS CEGPERFERH ERLEKWRKIM EGKGFKSVAL 540 SPNAVTQSKI LLGLYSCEGY RLTEDKGCLL LGWQDRAIVA ASAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MINSLCGTLK SENNSRTKLQ PTSSNDSKKN ATQSSGDLDQ TGLTPPSLNL PALKFDLDGD  60
VEVQSPDNSL WESFFADQLD ADFMISSPVR NLPSPQLSSY NCSYNYAHGM QTQSLSGCSP  120
PKFSSSFNSS HKGKGLSPLH RVFNSPNNQY MQHVENLSLP AIEEFLEDYQ GYSSTKVSSD  180
IATSSECFDL STQIPSSLLD TLTLPDSSRY HGSVDEESSE QDSGLQLVHL LLACAEAVAK  240
EEYMLARRYL HHLNRVVTPL GDSMQRVAAC FTDSLSARLN ATLSPKPSKS LSPSNSMEVL  300
KIYQIVYQAC PYVKFAHFTA NQAIFEAFET EERVHVIDLD ILQGYQWPAF MQALAARPTT  360
APFLRITGVG PSIDAVRETG RCLTELAHSL RIPFEFHAVG EQLEDLKPHM LHRRVGEALA  420
VNAVNRLHRV PGNHLGNLLT MIRDQAPNIV TLVEQEASHN GPYFLGRFLE ALHYYSAIFD  480
SLDATFPADS AQRAKVEQYI FAPEIRNIVS CEGPERFERH ERLEKWRKIM EGKGFKSVAL  540
SPNAVTQSKI LLGLYSCEGY RLTEDKGCLL LGWQDRAIVA ASAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-96	234	584	26	378	Protein SCARECROW
5b3h_A	1e-96	234	584	25	377	Protein SCARECROW
5b3h_D	1e-96	234	584	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0146s00200.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027914631.1	0.0	DELLA protein RGL1-like
Swissprot	G7L166	0.0	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A4D6M782	0.0	A0A4D6M782_VIGUN; DELLA protein
STRING	AES78313	0.0	(Medicago truncatula)
STRING	AES78316	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9470	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-99	RGA-like 1

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]