PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0129s00110.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 106aa    MW: 12235.2 Da    PI: 11.2951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0129s00110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.95.3e-131968154
                AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54
                       ++y+G r ++ +gr+ AeIrd      k++ ++lg+f++ eeAa+a+   ++ l+
  Vradi0129s00110.1 19 PRYQGMRKKP-WGRFTAEIRDlL----KKAIVWLGTFDSVEEAARAYGVVAQTLR 68
                       68*****888.**********66....35*****************977776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-81968IPR001471AP2/ERF domain
CDDcd000183.60E-151968No hitNo description
PROSITE profilePS5103215.2112078IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-132069IPR016177DNA-binding domain
SMARTSM003802.2E-92084IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-172069IPR001471AP2/ERF domain
PRINTSPR003677.1E-82132IPR001471AP2/ERF domain
PRINTSPR003677.1E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MSMVTATAAA TNRSLLKEPR YQGMRKKPWG RFTAEIRDLL KKAIVWLGTF DSVEEAARAY  60
GVVAQTLREC ERQKRDRGRK RYSPMMETES GRSRFVLPTR GYFRQ*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0129s00110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503086.12e-25ethylene-responsive transcription factor 3-like
SwissprotQ9LDE47e-20ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A0L9TKS15e-24A0A0L9TKS1_PHAAN; Uncharacterized protein
TrEMBLA0A1S3UAP05e-24A0A1S3UAP0_VIGRR; ethylene-responsive transcription factor 3-like
STRINGGLYMA14G02360.13e-21(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.13e-22ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]