PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0111s00060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 585aa    MW: 65522.4 Da    PI: 9.7454
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0111s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.1e-08492541147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r +++  E e lv+av++lG+g+W+ + ++     k+Rt  ++k++w ++
  Vradi0111s00060.1 492 RRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFdhaKHRTYVDLKDKWKTL 541
                        567888999**********************99**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.674487546IPR017930Myb domain
SMARTSM007171.6E-7491544IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10492542IPR009057Homeodomain-like
CDDcd116601.38E-16493543No hitNo description
SuperFamilySSF466891.11E-15493574IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MMLQKKVNYG FNGYKGPAIP KASRSIRGRG TIKKKPENNQ IQAFEILANV AGNFLQESEN  60
SGLDNVASAK DPHTFSSADM KDKLEDERGS FKKDLCEHGN CSEIVSVCLP SRQGKHENLR  120
VMDSSSFPGN HLEGQGQNIL EREDERGKRR RVNEKSTHIK GSFEGLIEPS CKVSKDCSSE  180
NNVAKSSLEG HRHLDSFPNT SSGRKLGRDD DENLVNNTQI NSRDKIYSTP PDMQKLKYAS  240
SLMSDENNSR DNSELENLQR MYPFKKRKFF NQTSSSTSDR GSQCQGTFDS SDTTRVNDTN  300
HGTAIEESSS IVGQQVHSGS KGCNVKLSIK SFKVPELFIN IPETATIGSL KGKKVRDDSK  360
TLIQTGISQD DKRHRLGFML EPRHTSNSPS SCNDNPCFLT TGSQQKLSKQ STSLMLQQGT  420
YNVSQERSRI KIESCVEGDL NVVSSQPDTY ANNNMSKCRT LVAVPAINME ALAVVPFRRK  480
SGNPDFAQRR IRRPFSVLEV EALVQAVEKL GTGRWRDVKQ RAFDHAKHRT YVDLKDKWKT  540
LVHTARISPQ QRRGEPVPQE LLDRVLAAHA YWSQQQCKHQ LKPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-524765841109Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147151KRRRV
2258267QRMYPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0111s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416621.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLA0A4D6NGN90.0A0A4D6NGN9_VIGUN; Uncharacterized protein
STRINGXP_007140327.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.17e-77TRF-like 2