PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0100s00030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 498aa    MW: 55348.7 Da    PI: 9.4396
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0100s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036442464123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp+C+k F++   L  H r+H
  Vradi0100s00030.1 442 HECPICNKIFRSGQALGGHKRSH 464
                        79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-4834IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.46E-6836No hitNo description
PROSITE profilePS5015710.1381239IPR007087Zinc finger, C2H2
SMARTSM003550.141234IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-61235IPR007087Zinc finger, C2H2
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39104131IPR007087Zinc finger, C2H2
SMARTSM003551.9104126IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.15E-8105126No hitNo description
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
PfamPF139126.7E-5106128IPR007087Zinc finger, C2H2
SuperFamilySSF576673.15E-8437464No hitNo description
PfamPF139122.2E-11441464IPR007087Zinc finger, C2H2
PROSITE profilePS501579.702442464IPR007087Zinc finger, C2H2
SMARTSM003550.018442464IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280444464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MMSYQSMEER KFVCKYCSKR FPCGKSLGGH IRTHMMSENS ALGNAERSNA TNGMFKLNGR  60
GKRKRDLGSE ENGGGGGGPT YGLRENPKKT TRFVHSNSSL QLEKFCKECG KGFLSLKALC  120
GHMACHSEKD KGANRFESSS SGFAEKQKLA MDSQSDTETS TPRRSKRMRF KTLSNSNNQA  180
QSSVSEVEQG QEEVARCLMM LSKDSSYKGR FSLFTESSDN NSVVLEVKSP SPDTKVTMMN  240
SDDKNFMSGA YVEKKLEQSK KFKYAEVGYD SDNSDSGYFR YGPKEVDSTD SNNGNFKNEV  300
QSSKVGCFSG FEDYDVESRK LPSRSIEFKK FVLENWENDR QDAGAAKKFD SKKSKKPNYD  360
SLGQNLVRIS SRKMGNGSAI DKVNKYEYLT SERDNGYDDS AYESDENSTD SDSYPAPKAY  420
SNRNLSGQKG KKKLKSKKSK AHECPICNKI FRSGQALGGH KRSHFIGGSE ENTLVIRPRA  480
AVVPCLIDLN LPAPVDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0100s00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492898.10.0dentin sialophosphoprotein
TrEMBLA0A1S3TGJ70.0A0A1S3TGJ7_VIGRR; dentin sialophosphoprotein
STRINGXP_007157592.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-83C2H2-like zinc finger protein