PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0095s00130.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 525aa    MW: 58794.8 Da    PI: 6.3996
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0095s00130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.1e-192075257
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                       +kR+  t+ ql++Le++++ ++yp++e++ eLA++l+Lte+q++ WF+ rR k+kk
  Vradi0095s00130.1 20 KKRRLKTPAQLTALESFYNDHKYPTEEMKSELAEELELTEKQISGWFCHRRLKDKK 75
                       89****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-20275IPR009057Homeodomain-like
SuperFamilySSF466894.11E-171679IPR009057Homeodomain-like
PROSITE profilePS5007116.9571676IPR001356Homeobox domain
SMARTSM003891.2E-181880IPR001356Homeobox domain
CDDcd000863.63E-82075No hitNo description
PfamPF000461.4E-162075IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MEETTEMQSE ENKLSMEKNK KRRLKTPAQL TALESFYNDH KYPTEEMKSE LAEELELTEK  60
QISGWFCHRR LKDKKLLNDE VGANGRQDRS SGVIQDRGSG LVQDSCGSTK HGDYRYLDPK  120
EVESHGLYNH EFSAADMTYA QRSHHYSEND SATDNTSSQS CSSLQDRLLP QGQDQYDMEP  180
SIHLMPNGSL PPLNPKGANN MGYKPSGYLK VKGEIEHAAI TAVKKQLGNH FQEDGPLLSV  240
EFDTIPPGAF EGQIADLANE GYYAANPALP NSPEVSAVKK QSSSSRYDSY FTKLRSQDSH  300
MVGGDFGSLH GPDFQDKKSH KQINQRASFN SFTNHLLHKN SSLDLYVDST GEASAYNGGK  360
NHRVGTKHGF EGMRSDTASY PSDHYEENAV AVKQIDSLLH LYNNINLKNV QKNEYVKSKP  420
SNSIHKSQIY LNAEEKGLTK RMAKEENFNG ERKLKKQYHD PDGIGVLSNE KMVAKRAKVD  480
PFESYDVKQT PVSDLEPRKV QRSAAEMPSR FSEDETAETS SSVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924KKRRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0095s00130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490290.10.0homeotic protein proboscipedia isoform X1
TrEMBLA0A1S3T9570.0A0A1S3T957_VIGRR; homeotic protein proboscipedia isoform X1
STRINGXP_007146316.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.11e-68HB-other family protein