PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0086s00070.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 313aa    MW: 35868.8 Da    PI: 6.445
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0086s00070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.24.8e-10193236548
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                        kr +r   NR +A+rsR RK+++i eLe+ + +L+ae + L  +
  Vradi0086s00070.1 193 KRVKRILANRQSAQRSRVRKLQYISELERSATSLQAEVSVLSPR 236
                        899*********************************98777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-13189253IPR004827Basic-leucine zipper domain
PfamPF077168.1E-9190238IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.393191243IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.53E-10193247No hitNo description
Gene3DG3DSA:1.20.5.1703.4E-10193244No hitNo description
CDDcd147033.36E-20194244No hitNo description
PROSITE patternPS000360196211IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAQLPPKIPN LSPSWPDFSS QHQKMPLPPL NNDTAATHQN QNPSWVDEFL DFSSSRRGAH  60
RRSVSDSITY LDAPMRCGEN NNHNNGNGNE FDRFDDEQFM SMFTDEVVLS GVPLPPPTTL  120
SSSNPSSPSD QNFFHDDKES SRKERKLQKE EEEHHHQLKN EVDEVESQCM QEIAQPPNDT  180
NTSSSNERIT DPKRVKRILA NRQSAQRSRV RKLQYISELE RSATSLQAEV SVLSPRVAFL  240
DHQRLLLNVD NSALKQRIAA LAQDKIFKDA HQEALKREIE RLRQVYEQQR LKKMENAGDV  300
HQREKEVQLL NV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0086s00070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491711.10.0basic leucine zipper 61-like
SwissprotQ9M2K41e-112BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A1S3TD760.0A0A1S3TD76_VIGRR; basic leucine zipper 61-like
STRINGXP_007149772.11e-180(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20113488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-106bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]