PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0083s00640.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 312aa    MW: 35378.4 Da    PI: 4.5709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0083s00640.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-1982131255
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +++GVr+++ +grW+AeIrd +     + +r++lg++ taeeAa  +++a+ +++g
  Vradi0083s00640.1  82 KFRGVRQRP-WGRWAAEIRDpF-----KqTRIWLGTYNTAEEAAMVYDKAAISFRG 131
                        89*******.**********66.....34***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-2981139IPR001471AP2/ERF domain
SMARTSM003802.3E-3482145IPR001471AP2/ERF domain
PROSITE profilePS5103222.89382139IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-2182138IPR016177DNA-binding domain
CDDcd000183.93E-3282138No hitNo description
PfamPF008471.2E-1282131IPR001471AP2/ERF domain
PRINTSPR003674.0E-108394IPR001471AP2/ERF domain
PRINTSPR003674.0E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEEVSFSEEK FVTYKHVDHG ILNQTPKVVR ISMMDADVTD DEDEGLVKLP KIKKIVNEIR  60
IVKKKPSSSV SVKQHIKEPG RKFRGVRQRP WGRWAAEIRD PFKQTRIWLG TYNTAEEAAM  120
VYDKAAISFR GSHALTNFIK PPTMEDMHKS STKEDMPIME DMHKSSTKED MHMDAVSFDY  180
ACYDESQGSW SDLVENVSGG TGSSRESHLS SPTSVLGLQH EKHEKLVSEE VFETDGLFIE  240
DPSFEDTFSF VDLYLPSIDF NSGIDFMVDT NVKPSDDDLC DISPLDNENF QSFNWDIDSY  300
FNDLSSPKTS G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2280138362ATERF1
3gcc_A1e-2280138362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0083s00640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491449.10.0ethylene-responsive transcription factor CRF4
TrEMBLA0A1S3TCF60.0A0A1S3TCF6_VIGRR; ethylene-responsive transcription factor CRF4
STRINGXP_007147274.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-35cytokinin response factor 4