PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0083s00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 235aa MW: 26875 Da PI: 5.4861 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 24 | 75 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++ q++ Le++Fe ++ + +++ eLA++lgL+ rqV +WFqN+Ra++k Vradi0083s00170.1 24 KRFSDGQVKSLESMFETDSRLEPAKKLELARELGLQPRQVAIWFQNKRARWK 75 57*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 116.7 | 1.3e-37 | 22 | 113 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+r+s+ qvk+LE++Fe++++Lep +K elareLglqprqva+WFqn+RAR+k+kq+ +dy++L+++y++l ++ ++L+ke +++ ++l++ Vradi0083s00170.1 22 NKKRFSDGQVKSLESMFETDSRLEPAKKLELARELGLQPRQVAIWFQNKRARWKLKQVQRDYTTLRANYNTLDSRFDALNKEYQSMLTQLQD 113 69***********************************************************************************9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-19 | 7 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.18E-18 | 7 | 78 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.4E-16 | 15 | 81 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 17.086 | 17 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.00E-14 | 23 | 78 | No hit | No description |
Pfam | PF00046 | 5.0E-16 | 23 | 75 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 3.3E-6 | 48 | 57 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 52 | 75 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.3E-6 | 57 | 73 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.3E-11 | 77 | 119 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSDIEEYSHS SNAGTRNKRS INKKRFSDGQ VKSLESMFET DSRLEPAKKL ELARELGLQP 60 RQVAIWFQNK RARWKLKQVQ RDYTTLRANY NTLDSRFDAL NKEYQSMLTQ LQDLKNRLQK 120 PLEQTESCST LYKAANSMES EAGNGETVKR EQEIKQPCST AGRSEGIVRS VISDCDSSIK 180 AKQYFGVEDE ASLLSFVEIT DGSLTTPQHW GLLESDDIMG QLTGCDYQWW DFWS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0083s00170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-163 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022633575.1 | 1e-175 | homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | A0A3Q0EPI3 | 1e-174 | A0A3Q0EPI3_VIGRR; homeobox-leucine zipper protein ATHB-12 | ||||
STRING | XP_007147343.1 | 1e-139 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5635 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 1e-50 | homeobox 12 |