PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0083s00110.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 587aa    MW: 66217.6 Da    PI: 5.4793
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0083s00110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS319.95.2e-982135842374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetsekn.sseelaalklfsevsPi 90 
                         e Ll+cAe v ++++e+a++lL++ + l+s++g+p++R+++yf+eAL +r+ r ++ + +k l + ++ ++++  +e   a  +f+e+ P+
  Vradi0083s00110.1 213 SESLLACAEKVGHQQFERARKLLSHCQSLSSKTGSPVKRVVHYFAEALLHRIDReTGRGSSKDLhKGQSFDPEEaAKELNPAIAAFYEALPF 304
                        578***************************************************7788888888444555555535555667788******* PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                         +++ +ta qaI e v++++++H+iD++i +G+QW+ L+qaL sR + p   l+iT+++s +   ++ +e tg+rL++fA+ l++pf+fn++
  Vradi0083s00110.1 305 SQIAVFTAVQAIIEDVAEAKKIHVIDLEIRKGGQWAILMQALESRHQCPVeLLKITAIESGT--TRNIVEDTGKRLKDFAQGLNIPFSFNIV 394
                        **********************************************6665499*******44..9999************************ PP

               GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                        ++++l  l+ + ++++++Ea+aV ++++l    ++s +les    +++++++lsP+v+vv+e ea+hns+sF++rf+eal ++sa+fd+le+
  Vradi0083s00110.1 395 MVQDLLHLREDLFEIDHEEAIAVYSHFALRAKIQQSDQLES----IMRVIRTLSPNVMVVAEIEANHNSTSFVNRFIEALFFFSAFFDCLEV 482
                        ********************************999999999....*********************************************** PP

               GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkd 364
                         +  ++++r+ +E  +++ +i+n+va+egaer+ r+ +   Wr+ ++++G+ + +ls++   qa+l+ ++++ +   + +++ ++l+ gWk+
  Vradi0083s00110.1 483 CMKGNEKTRMIIESLYFSHAIKNIVATEGAERKTRNVKIDVWRAFFSRFGMVEKELSTSSLYQADLVSKRFPcGSSCTFDKNGQCLLVGWKG 574
                        ************************************************************************9999999************* PP

               GRAS 365 rpLvsvSaWr 374
                         p+ svS+W+
  Vradi0083s00110.1 575 TPIHSVSVWK 584
                        *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.371186563IPR005202Transcription factor GRAS
PfamPF035141.8E-95213584IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MEDLYHACFS TVDENSSSSN DIFWGSEEQN EIKKLHFSVA EDHGVYGGVD SFYSNFEFSP  60
DYPSGNLISP NQEKYHQQQS YHDYGHLDDN LQFDMVSPPL QFDAQYPTSG TTEDKPHSTI  120
PLASLEILKN YGKGFKRFSY EGKSLQPVVD SVATDEFGFR KLSTEDIMRI AGTRFIKSSS  180
SSESEPLTFL ENHPYGFSFS GFSDEEKEDV ALSESLLACA EKVGHQQFER ARKLLSHCQS  240
LSSKTGSPVK RVVHYFAEAL LHRIDRETGR GSSKDLHKGQ SFDPEEAAKE LNPAIAAFYE  300
ALPFSQIAVF TAVQAIIEDV AEAKKIHVID LEIRKGGQWA ILMQALESRH QCPVELLKIT  360
AIESGTTRNI VEDTGKRLKD FAQGLNIPFS FNIVMVQDLL HLREDLFEID HEEAIAVYSH  420
FALRAKIQQS DQLESIMRVI RTLSPNVMVV AEIEANHNST SFVNRFIEAL FFFSAFFDCL  480
EVCMKGNEKT RMIIESLYFS HAIKNIVATE GAERKTRNVK IDVWRAFFSR FGMVEKELST  540
SSLYQADLVS KRFPCGSSCT FDKNGQCLLV GWKGTPIHSV SVWKFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-422145846375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0083s00110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491526.10.0DELLA protein RGL1-like
TrEMBLA0A1S3TCN60.0A0A1S3TCN6_VIGRR; DELLA protein RGL1-like
STRINGXP_007147356.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.14e-52RGA-like 2