PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0083s00100.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 372aa    MW: 41819.7 Da    PI: 5.1799
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0083s00100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.4e-29128189159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs+edp+++e+tY+g+H+++
  Vradi0083s00100.1 128 LDDGYSWRKYGQKDILGAKFPRGYYRCTHRnvqGCLATKQVQRSDEDPTTIEVTYRGRHTCT 189
                        59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-28120190IPR003657WRKY domain
PROSITE profilePS5081123.319123186IPR003657WRKY domain
SuperFamilySSF1182901.12E-25127190IPR003657WRKY domain
SMARTSM007744.7E-41128190IPR003657WRKY domain
PfamPF031066.2E-27129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEQSPKRKHS SLIHELIQGK ELAKQLGNLL VSSSPASHET NELLVDKILS SYEKALTMLN  60
WGSIVGEAKT TSATMMDSHC SFTNGGSPKS EVVDRELDHK AVLKKRKTMP RWTEQVKICS  120
RTGLEGSLDD GYSWRKYGQK DILGAKFPRG YYRCTHRNVQ GCLATKQVQR SDEDPTTIEV  180
TYRGRHTCTQ AKYLNKAFPS NIKKGLEENQ LHNDETNQPI NEKIQQTPVG IFAFETEHRV  240
KTEELEIKED IFPWFSFPSQ SNGSENEDVL PESTFENHFT ESFSPAFISP ATSESNPFCL  300
SACYLNSTEL LCQQIQTSES DITETFSAPT SVTNSPILDL DILLHKGDFD TDFPFNNPDF  360
FSSFELPCTS T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20127188768OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0083s00100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491586.10.0probable WRKY transcription factor 30
TrEMBLA0A1S3TCU10.0A0A1S3TCU1_VIGRR; probable WRKY transcription factor 30
STRINGXP_007147293.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-53WRKY DNA-binding protein 30