PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0051s00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 27890 Da PI: 4.4662 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.7 | 6.5e-09 | 16 | 41 | 17 | 44 |
HHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrw 44 +q+G++ W++Ia+ + gRt++++k++w Vradi0051s00060.1 16 AQFGNR-WAKIASFLS-GRTDNDVKNFW 41 79****.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.377 | 1 | 49 | IPR017930 | Myb domain |
CDD | cd00167 | 3.90E-6 | 13 | 41 | No hit | No description |
SuperFamily | SSF46689 | 2.73E-7 | 15 | 52 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-10 | 15 | 43 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-6 | 15 | 41 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MQVFTRGRED CDRVQAQFGN RWAKIASFLS GRTDNDVKNF WSSRQKRLAR ILQTSGTTSK 60 SQKNKTKVPT LLDVPTLEAP KFSSSSEGES SSKPQSYSLP LIENSEVIKM VSLPDLIKSE 120 LPSSDPIHVE QGFNPFASYN SSEQIQQTSF PQIPELQNDL TFPMGSQDVL ARIDESYFVD 180 DYCALDDASE FGIGLQHPIG FPFFEPPGSC RIEARDTIDR FKSSDSFFDD FPMDMFDHID 240 PPASPSYL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0051s00060.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014515433.2 | 1e-156 | transcription factor DUO1 | ||||
TrEMBL | A0A1S3VAQ9 | 1e-154 | A0A1S3VAQ9_VIGRR; transcription factor DUO1 | ||||
STRING | XP_007134506.1 | 1e-138 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3693 | 31 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 5e-17 | MYB family protein |