PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0053s0040.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family GATA
Protein Properties Length: 206aa    MW: 22063.7 Da    PI: 8.6167
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0053s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.22.6e-14942134
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                         C +Cgt +Tp+WRrgp  ++tLCnaCG +y  kg
  Vocar.0053s0040.1.p  9 CCHCGTLQTPCWRRGPPEKPTLCNACGSRYLVKG 42
                         99**************************996665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.24335IPR000679Zinc finger, GATA-type
SMARTSM004017.7E-6361IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.37E-11544No hitNo description
CDDcd002025.20E-12842No hitNo description
Gene3DG3DSA:3.30.50.101.8E-10941IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440934IPR000679Zinc finger, GATA-type
PfamPF003205.2E-12942IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRGSNGGPCC HCGTLQTPCW RRGPPEKPTL CNACGSRYLV KGSLAGYFPG ARRSAVNATR  60
SEVVSHQVVV TKGPRKAALA TTAGAKRKSQ ELCGFEGQAQ RIYNEYEALE ALRYSYFCRG  120
PSIGQGDGLG ATVSDSSAEA QHDEDCFRKE AHYLDASSDE YQEPGQGTPI HHTLGATTAT  180
GVAGPQQVMF HRRPRKQLRP VACSC*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DHW34e-56A0A2K3DHW3_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4501526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.12e-19GATA transcription factor 27