PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G47140.1 | ||||||||
Common Name | GATA27, K14A3.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GATA | ||||||||
Protein Properties | Length: 470aa MW: 52601.1 Da PI: 6.3626 | ||||||||
Description | GATA transcription factor 27 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.4 | 3.1e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ AT5G47140.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.6E-9 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.81E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 2.00E-16 | 6 | 54 | No hit | No description |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.3E-13 | 7 | 40 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 5.3E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 1.1E-10 | 235 | 329 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHA RAEGDETEIE 60 DHRTQTVMIK GMSLNKKIPK RKPYQENFTV KRANLEFHTG FKRKALDEEA SNRSSSGSVV 120 SNSESCAQSN AWDSTFPCKR RTCVGRPKAA SSVEKLTKDL YTILQEQQSS CLSGTSEEDL 180 LFENETPMLL GHGSVLMRDP HSGAREEESE ASSLLVESSK SSSVHSVKFG GKAMKQEQVK 240 RSKSQVLGRH SSLLCSIDLK DVFNFDEFIE NFTEEEQQKL MKLLPQVDSV DRPDSLRSMF 300 ESSQFKENLS LFQQLVADGV FETNSSYAKL EDIKTLAKLA LSDPNKSHLL ESYYMLKRRE 360 IEDCVTTTSR VSSLSPSNNN SLVTIERPCE SLNQNFSETR GVMRSPKEVM KIRSKHTEEN 420 LENSVSSFKP VSCGGPLVFS YEDNDISDQD LLLDVPSNGS FPQAELLNMI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.50512 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145358945 | 0.0 | ||||
Expression Atlas | AT5G47140 | - | ||||
AtGenExpress | AT5G47140 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a member of the GATA factor family of zinc finger transcription factors. | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G47140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G47140 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK226642 | 0.0 | AK226642.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-38-K02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_199525.2 | 0.0 | GATA transcription factor 27 | ||||
Swissprot | Q5PP38 | 0.0 | GAT27_ARATH; GATA transcription factor 27 | ||||
TrEMBL | Q0WVU5 | 0.0 | Q0WVU5_ARATH; Uncharacterized protein At5g47140 | ||||
STRING | AT5G47140.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 | Representative plant | OGRP2749 | 15 | 30 |
Link Out ? help Back to Top | |
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Phytozome | AT5G47140.1 |
Entrez Gene | 834760 |
iHOP | AT5G47140 |
wikigenes | AT5G47140 |
Publications ? help Back to Top | |||
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