PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0025s0120.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

Nin-like

Protein Properties

Length: 1439aa MW: 147606 Da PI: 7.4794

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0025s0120.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	61.7	1.3e-19	87	135	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +sl +l++ ++lp k+AA++L+v+l+ LKr CR +++ RWPhRk++sl Vocar.0025s0120.1.p 87 ALSLTELQSVYHLPSKEAARSLNVSLSRLKRSCRAHNVLRWPHRKLSSL 135 699*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.801	71	155	IPR003035	RWP-RK domain
Pfam	PF02042	6.7E-19	88	135	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 1439 aa Download sequence Send to blast
MEAWALAAGE QNIQVTALAV DDRRHSLGGS TTTTTASRAM LIRQSPMEIS RGPSVGSASR 60 HSLGDVRDQF QSDDDEAEPG ADSLDDALSL TELQSVYHLP SKEAARSLNV SLSRLKRSCR 120 AHNVLRWPHR KLSSLSNLQE TIRNDKNMRL LDKQRILQQI VNEISAVRAN PDHTIDPRLD 180 EIRQAKYKLK YYHKTKHTLG SSSASSRKRR QSAPYPDQAL NLNLSAAAMA PISAVAAATA 240 NTTAYNGEGV SPPPPRQQQQ QQLLLSPSPW ASPGGRPGPE GGGPFATVSA PAAPAASLYT 300 ATVHAASASA AVFRGGGSGG SGGGGDSVDG QLAASFPSGS ALARFTSDRA SFGGSGFCLP 360 GVGGSVIDEM HLSRDGCSAH AVGGGIGSGC NSSSGGVGQV HRDMTMMGPM APVAAPSQRP 420 TQDSRLSEPG VGLPYGFPLS MQPGPAPLAG GTTAVSLNVQ HSQHQLQMLQ LQHGHRENHH 480 HYYAFQQQQQ WEQQQQQQLV GGLRRPSVGM MDETTGVVYP LPGMGPWGRK SGRLSDASMD 540 GVSSAPPAEG AAVATSVAPN HSAPSSSLWP SPPPPLPPQS ATSCQMQLSN PSPHLAQALG 600 SPPLSTGGVG GSATAAAATV TAAAALSAGP NSAGSVSGGA CAAESFPLGA CAAIAPHSGA 660 NNLSLSSSSS LAANGFAAFA GTFGGGNVDG GRASGGGARL GAPYSHGVVN TCCPPPRCSS 720 TGDPHIMAAA VAPPPGLAAM ALPRQVSAPP PMYGSVATGG GGGASAGGST CSGGGGFYGG 780 STTPMCGMPD GAARARFLST DGGYQEALGM PQPARSSHTG GGAVLSYSTT AATAAAGGVG 840 SHHTTLHFEA HVGISTVGSA ALASSSPPWF GIEARVRSGI VPPVAAAQAS AAMAPAPEDS 900 SRTATTAAAL ETHVYQEQQP LMQQQQMHMQ QQQMHMQHTQ GLRQAEQRHH HQQDCVSMQH 960 QHEQYQQQQR QHARQHPQYQ HKDLQREQHM HQQQQYQQQN QQARHLRQAY LHQQEQAQQK 1020 EQVRQQEQQQ GQARQQQIGH GHVHAGAQAQ QLVPSSASCM APLQMTAPKH QLQPLLQQAE 1080 WQQQQRPFPY VQQFGGSLDG GNSGSSPPAT ETGGFQNVPY KPYGMDGTAA RHSVVVKTGD 1140 GAAATIAAAV AKPPLLNAAG TDVRMSSSTG GAAAALGWVG REESSPSAAA RGSGASDGCC 1200 GELPISAGGN SASGVAPNGH SVACGTSSTT FLPGRSVTTG VPMRAPSPLQ GRPGQYPQHT 1260 IADAMAYVGA SWRSPVRGSA GADGTCADAG GRAWSKPSAS VEAPEGLLSV QESSPPPQQE 1320 QQQQQQQALQ QPQQLQQPQQ VQLQQCYAAK LEPWGSSSDL FCPFPHDGAS PTVAAVAAAG 1380 APAPVPAPAA GPSAAGNTGG TGLGTACGRA ETAATGGDGC DADGSAGVML ASFDWLLE*

Sequence ? help Back to Top

Protein Sequence Length: 1439 aa Download sequence Send to blast

MEAWALAAGE QNIQVTALAV DDRRHSLGGS TTTTTASRAM LIRQSPMEIS RGPSVGSASR  60
HSLGDVRDQF QSDDDEAEPG ADSLDDALSL TELQSVYHLP SKEAARSLNV SLSRLKRSCR  120
AHNVLRWPHR KLSSLSNLQE TIRNDKNMRL LDKQRILQQI VNEISAVRAN PDHTIDPRLD  180
EIRQAKYKLK YYHKTKHTLG SSSASSRKRR QSAPYPDQAL NLNLSAAAMA PISAVAAATA  240
NTTAYNGEGV SPPPPRQQQQ QQLLLSPSPW ASPGGRPGPE GGGPFATVSA PAAPAASLYT  300
ATVHAASASA AVFRGGGSGG SGGGGDSVDG QLAASFPSGS ALARFTSDRA SFGGSGFCLP  360
GVGGSVIDEM HLSRDGCSAH AVGGGIGSGC NSSSGGVGQV HRDMTMMGPM APVAAPSQRP  420
TQDSRLSEPG VGLPYGFPLS MQPGPAPLAG GTTAVSLNVQ HSQHQLQMLQ LQHGHRENHH  480
HYYAFQQQQQ WEQQQQQQLV GGLRRPSVGM MDETTGVVYP LPGMGPWGRK SGRLSDASMD  540
GVSSAPPAEG AAVATSVAPN HSAPSSSLWP SPPPPLPPQS ATSCQMQLSN PSPHLAQALG  600
SPPLSTGGVG GSATAAAATV TAAAALSAGP NSAGSVSGGA CAAESFPLGA CAAIAPHSGA  660
NNLSLSSSSS LAANGFAAFA GTFGGGNVDG GRASGGGARL GAPYSHGVVN TCCPPPRCSS  720
TGDPHIMAAA VAPPPGLAAM ALPRQVSAPP PMYGSVATGG GGGASAGGST CSGGGGFYGG  780
STTPMCGMPD GAARARFLST DGGYQEALGM PQPARSSHTG GGAVLSYSTT AATAAAGGVG  840
SHHTTLHFEA HVGISTVGSA ALASSSPPWF GIEARVRSGI VPPVAAAQAS AAMAPAPEDS  900
SRTATTAAAL ETHVYQEQQP LMQQQQMHMQ QQQMHMQHTQ GLRQAEQRHH HQQDCVSMQH  960
QHEQYQQQQR QHARQHPQYQ HKDLQREQHM HQQQQYQQQN QQARHLRQAY LHQQEQAQQK  1020
EQVRQQEQQQ GQARQQQIGH GHVHAGAQAQ QLVPSSASCM APLQMTAPKH QLQPLLQQAE  1080
WQQQQRPFPY VQQFGGSLDG GNSGSSPPAT ETGGFQNVPY KPYGMDGTAA RHSVVVKTGD  1140
GAAATIAAAV AKPPLLNAAG TDVRMSSSTG GAAAALGWVG REESSPSAAA RGSGASDGCC  1200
GELPISAGGN SASGVAPNGH SVACGTSSTT FLPGRSVTTG VPMRAPSPLQ GRPGQYPQHT  1260
IADAMAYVGA SWRSPVRGSA GADGTCADAG GRAWSKPSAS VEAPEGLLSV QESSPPPQQE  1320
QQQQQQQALQ QPQQLQQPQQ VQLQQCYAAK LEPWGSSSDL FCPFPHDGAS PTVAAVAAAG  1380
APAPVPAPAA GPSAAGNTGG TGLGTACGRA ETAATGGDGC DADGSAGVML ASFDWLLE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	210	SRKRRQ
2	689	696	GGRASGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002957545.1	0.0	RWP-RK domain-containing transcription factor
TrEMBL	D8UFT9	0.0	D8UFT9_VOLCA; RWP-RK domain-containing transcription factor
STRING	XP_002957545.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP11614	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-12	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Vocar.0025s0120.1.p