PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0024s0002.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB
Protein Properties Length: 841aa    MW: 85979 Da    PI: 8.7704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0024s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.9e-14347348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          W++ Ede+l ++vk++G+++W+ Ia+++  ++  kqc+ rw ++l
  Vocar.0024s0002.1.p  3 QWSAHEDEQLRKLVKEYGPKRWSVIASKLK-TKGSKQCRRRWKNHL 47
                         5****************************9.*************96 PP
2Myb_DNA-binding48.91.5e-155494244
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                         g WT++Ed +l+++++++G++ W+ Ia+++g gRt++ +k+r+
  Vocar.0024s0002.1.p 54 GGWTADEDRILLEGHRLYGNK-WTEIAKMVG-GRTDNAVKNRY 94
                         66*******************.*********.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.666151IPR017930Myb domain
SMARTSM007177.2E-12149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-21355IPR009057Homeodomain-like
SuperFamilySSF466896.36E-26394IPR009057Homeodomain-like
PfamPF002494.5E-13347IPR001005SANT/Myb domain
CDDcd001675.17E-15447No hitNo description
PROSITE profilePS5129417.71652102IPR017930Myb domain
SMARTSM007179.2E-1652100IPR001005SANT/Myb domain
PfamPF002492.6E-145494IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-1956100IPR009057Homeodomain-like
CDDcd001671.59E-125694No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MAQWSAHEDE QLRKLVKEYG PKRWSVIASK LKTKGSKQCR RRWKNHLNAD LKSGGWTADE  60
DRILLEGHRL YGNKWTEIAK MVGGRTDNAV KNRYAALCKR DAKGTQRGGG AARGGRGGRK  120
PRPSDSDGGA SDVEMDDDSD DNEEAKRTSS SSASWEASPV RHTRGHASSA AAAEKAGVNS  180
TPPRSGPQAA PSPPQAKAEA PAAADTDAVV STGVRSSFLG RRRQAGGGGG GSPPLLPEPE  240
AGGGPAKRRA LLQSSGVVSA AAAAGGSAGG SGASGTVIRQ PITTPQTPLV QVPQQMQQQP  300
QESLITAYQH PQQPVSERMG LGARSGSAAA GAGAGRPPGA ASFGVQGLAL ERSPPLQQQH  360
QQYQHYQQQQ QQPYQRDKHL DSMHHPCSST GGGRETVEVV AACGQPKKLP LTINIPNAAS  420
AEPQAVQQPN VGAAVHGIEI RVLKDLLTPC EIQYARELND MQLPLHINVD EDSTVLAVSH  480
GGGCSLLGAA SSEPPLTTSR QAAHNALTAL FSPNSVAGGS SGDFNDVLKW FQSGFTPRSS  540
CGDEMTPRQL SRMGLTPCGL SGGRGGGLHC VEEAGMLGTG LTPKCLLDSG SPRSHGGIGG  600
LTPQMPELSA AKRARRQVEV AAAVAAAANE TPGTGPLALD SSCGLGRHIM GPATGGSGVG  660
VSLGGGGHGG SGAVAAAALG LTSPGGTELH AGHRQLLTKL IQTAAGADAN GQGAVSSCAG  720
GAAGDMNGGR LRLAPLSPST GMVTPEPLTR RGSLTRDLSG AGMMMGPMAA GAGGADYQGA  780
GTSGQVPNAT SSGGVVVMPY FTPQELMLLL EVLNSEDLQA LPPPPPPPSQ QQQQQQQQQQ  840
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-3441007103C-Myb DNA-Binding Domain
1msf_C6e-3441007103C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00259DAPTransfer from AT2G02820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002946041.10.0transcription factor Myb4
TrEMBLD8THA20.0D8THA2_VOLCA; Transcription factor Myb4
STRINGXP_002946041.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.11e-35myb domain protein 88