PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0021s0143.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family GATA
Protein Properties Length: 569aa    MW: 61364.7 Da    PI: 6.8287
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0021s0143.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.62.6e-163868131
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyr 31
                         C+ Cg+t+Tp+WR+gp g+ktLCnaCG++ +
  Vocar.0021s0143.1.p 38 CVECGATSTPQWREGPMGPKTLCNACGVRRQ 68
                         ***************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.3E-123285IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.8733265IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-123374No hitNo description
Gene3DG3DSA:3.30.50.105.4E-133668IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.5E-133866IPR000679Zinc finger, GATA-type
CDDcd002021.21E-113896No hitNo description
PROSITE patternPS0034403863IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MRGNKRRAAA VATAANKPQP ALNDAILDVA NRKGVRCCVE CGATSTPQWR EGPMGPKTLC  60
NACGVRRQRL LRKQQAATSG NIPTAPVAAV QARRRLLGRS MFSSSPLESD DMPFGAASGS  120
EHSSDETEFD WTTGMPAKRQ HQHQHPKEQQ HEEQQLIAPV EVEESCNEDE SAAYDLLFFA  180
GVECGSGCGL PSTDPPPASC WRSEQQHHHH HHGHHGHNTR RHVQPLRRSD DFYYYEEGEE  240
ASDGAEDDRC KRHRMSVSPP SEPLSVRPRS LPYHHHHHQH HHQHHHHVVT RQVLLGSSPL  300
SSTEDAAESG LASVLAKASD DIMQQQQQQQ QQQQGERDHP YGGHRQLLSS ALISDLRGAA  360
AVVGPLPATT APSPPFLGGS STSTSSSPLT LPALAAPTLL APGAAAFTRH PTPSPFSIPL  420
ALPVLPLSLP LPMPMPVPSM AALPAAALSA KDLEMLAKLR LDFQRACLQL HHANVACEAV  480
GAVVAERRQA AASAHEQAEA ASQMLASEAK AMVDRYRLRD VLAELHSATS AERSAPVATL  540
AAAEEEQAAV DNTVVMQETQ LPPPPQQM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.16e-12GATA transcription factor 9