PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0014s0106.2.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

Nin-like

Protein Properties

Length: 1884aa MW: 192618 Da PI: 6.9592

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0014s0106.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	62.1	9.8e-20	1708	1756	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ei+ + l+k ++lpi++AA L++++TvLK+ CR++ ++RWP+Rk++s Vocar.0014s0106.2.p 1708 REITKSALRKVYHLPINEAAAALNIGVTVLKKYCRKFRVPRWPYRKLQS 1756 689********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.495	1693	1777	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-19	1710	1756	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 1884 aa Download sequence Send to blast
MNTGKGLKAR RKFHGLPNSL MRRASKTWLG PNKCTSKPAG RGTLLAPSLY FYYVDQFRQW 60 FTEYEPPSLK GTTLQEPLCS ARRRRACRRL MEDLAEVLTE FHPSTGKVPH LDTLSQAHLP 120 IARELPNNDS LRLEEYLSAG SFAVLDAALH SICESQATLP ETNAGSSAPS SYYHSHQDQN 180 ALTGQGTNPM LATRQGFTSG QLAASTTGQT LQQQTQQHQQ QQQEHQHRQA ADGGQAAASG 240 TGSSGLFPRQ MNPQLAQPPT PQQQQQQQPS QHQLQELQHQ HLHQHQHQHQ HQQHQQQQQQ 300 QLLQGTRTSP AQQPSAPAQQ PQQQHSLQNH QQQQQQHQQH QQQKRPSLAS GGAACSRGPS 360 RSESNSNGSN QISRDATVPP PHESSTGESG PRADSGPMEV QVARATGATA AAVVTTVAAG 420 AAGGGGGSGA SGSRGDGHVA SGPAAGPAGG ASDQTHPPPP PPEVSTPPAE GRKLREEEQR 480 DVEEFVNLAW NANYKQGDAV RLEFTGPNVG ARTTGRLMAA ATAQLMRRGV AAAQAGQITG 540 LNTSIRSAME RHLPVKRDKA HLGDKGTELL TEALRHITEQ LMSRGVDPRS IIENHSNGTP 600 PGGGGAATAV AAAAAAANGG AGGSKTSLGS IGDNSADTAG LKLPSPPPVA AGAMVGMPPP 660 GGAMDLIQLQ QQQQLQQQLQ LQMQMQQAPQ FQQLMLEATR EHHQPTGPMG STGGPPLVDY 720 GGFFSPTGET GPVGVPAAGG GVSDILQEAF RAFAAEQEAA AVAAAAAAAA AEGGDGSGGD 780 MGATATMMDF QAAAAAAASS VLPNAATAAV PLYQRTTCSV TMIDVGHDES ELSSPHAAAA 840 AAAAAAAAAA AGGTLLSEGM QGACGPPGFR SGQWIPTGRS MVGGKAATLP SSSSSLQTTA 900 SAAAAAAAAA AAALPHQQQQ QMLHHSAAAG CAAGGMMSSF GGPPTCISPP PGPETSDKRP 960 LSPSRFDTGS PHRLSNAMSI LRNRSADLGS LDMIMSNDYF MDGVDPLLND GRQPSIADKF 1020 LMYIDGGGHP GMQPGGLIGL ASGFPLGPIP SGTAGDAAAA AAAATAGGPQ RQLPAAGLHS 1080 SGAGGAGGSA SAAAVDVFQN PHMPQAAVDG TCGGDATPGG GGGGGGGGGG NCLMGQDPRM 1140 IVYDMDAMMR SQAPTAFGGG VGVTTSAKPQ SFCRPSDNTL NTGNGSHTRE PLPSVDGGGS 1200 PAAPFGSSFA FAMAQYGNCP AADGGGDVGS VDGLARITSA PPGVLGDESA FCPRMSSAHA 1260 HGLSMAHGKG MSYSVPYSHG QGHPLAMNSA PAIWTGLGDS NLGGMDVYSM EHMGMPAPPG 1320 SAVERQQQVR QLQQQQQLQL EQLQQEQQQQ QQQQLQQQQL QQHQHQQQQQ LFAQLFPGAQ 1380 QAVCGGGGGS AGGSSISISP STMMSPTGNS PVMHFMPTSF PPQRDDSGCL SIGHKAHMLP 1440 RISTAVGLPP HFQPPPSPPS VVRNMRGGCA AANSVRAGGG AAAAAAAGQA PARSPRSSAP 1500 GTPRSPRAPA TGTPRSRTKA GCTPLSAPSP GAVKAQLDEM MRVDPVAAAA AAAGGGSGMS 1560 ESLAAAAAAA AVAAVAAAPE AALAAAAAAG LIVAEDAGAA VDSPGASGGG NLRRSRREAR 1620 GARGSTLGTA RTGRGGRSRG TDDDDEDYAT DADEDALSSD DGDDEGGGGG GGAGRGGGGG 1680 GGGTTSGEGY VDEDSVLVVR AVRDGVRREI TKSALRKVYH LPINEAAAAL NIGVTVLKKY 1740 CRKFRVPRWP YRKLQSMAKL IESFERYKKN AFSNGDIEGA ADCQDVIDRL LKFREEVYDN 1800 PDKDIDESVK KLRQANFKIE YRQRQGQTQG APPSTLTRSS LNGETPGAAT GVGGAPSSHD 1860 LRRDFETLSV NAASAEVTEP PPA*

Sequence ? help Back to Top

Protein Sequence Length: 1884 aa Download sequence Send to blast

MNTGKGLKAR RKFHGLPNSL MRRASKTWLG PNKCTSKPAG RGTLLAPSLY FYYVDQFRQW  60
FTEYEPPSLK GTTLQEPLCS ARRRRACRRL MEDLAEVLTE FHPSTGKVPH LDTLSQAHLP  120
IARELPNNDS LRLEEYLSAG SFAVLDAALH SICESQATLP ETNAGSSAPS SYYHSHQDQN  180
ALTGQGTNPM LATRQGFTSG QLAASTTGQT LQQQTQQHQQ QQQEHQHRQA ADGGQAAASG  240
TGSSGLFPRQ MNPQLAQPPT PQQQQQQQPS QHQLQELQHQ HLHQHQHQHQ HQQHQQQQQQ  300
QLLQGTRTSP AQQPSAPAQQ PQQQHSLQNH QQQQQQHQQH QQQKRPSLAS GGAACSRGPS  360
RSESNSNGSN QISRDATVPP PHESSTGESG PRADSGPMEV QVARATGATA AAVVTTVAAG  420
AAGGGGGSGA SGSRGDGHVA SGPAAGPAGG ASDQTHPPPP PPEVSTPPAE GRKLREEEQR  480
DVEEFVNLAW NANYKQGDAV RLEFTGPNVG ARTTGRLMAA ATAQLMRRGV AAAQAGQITG  540
LNTSIRSAME RHLPVKRDKA HLGDKGTELL TEALRHITEQ LMSRGVDPRS IIENHSNGTP  600
PGGGGAATAV AAAAAAANGG AGGSKTSLGS IGDNSADTAG LKLPSPPPVA AGAMVGMPPP  660
GGAMDLIQLQ QQQQLQQQLQ LQMQMQQAPQ FQQLMLEATR EHHQPTGPMG STGGPPLVDY  720
GGFFSPTGET GPVGVPAAGG GVSDILQEAF RAFAAEQEAA AVAAAAAAAA AEGGDGSGGD  780
MGATATMMDF QAAAAAAASS VLPNAATAAV PLYQRTTCSV TMIDVGHDES ELSSPHAAAA  840
AAAAAAAAAA AGGTLLSEGM QGACGPPGFR SGQWIPTGRS MVGGKAATLP SSSSSLQTTA  900
SAAAAAAAAA AAALPHQQQQ QMLHHSAAAG CAAGGMMSSF GGPPTCISPP PGPETSDKRP  960
LSPSRFDTGS PHRLSNAMSI LRNRSADLGS LDMIMSNDYF MDGVDPLLND GRQPSIADKF  1020
LMYIDGGGHP GMQPGGLIGL ASGFPLGPIP SGTAGDAAAA AAAATAGGPQ RQLPAAGLHS  1080
SGAGGAGGSA SAAAVDVFQN PHMPQAAVDG TCGGDATPGG GGGGGGGGGG NCLMGQDPRM  1140
IVYDMDAMMR SQAPTAFGGG VGVTTSAKPQ SFCRPSDNTL NTGNGSHTRE PLPSVDGGGS  1200
PAAPFGSSFA FAMAQYGNCP AADGGGDVGS VDGLARITSA PPGVLGDESA FCPRMSSAHA  1260
HGLSMAHGKG MSYSVPYSHG QGHPLAMNSA PAIWTGLGDS NLGGMDVYSM EHMGMPAPPG  1320
SAVERQQQVR QLQQQQQLQL EQLQQEQQQQ QQQQLQQQQL QQHQHQQQQQ LFAQLFPGAQ  1380
QAVCGGGGGS AGGSSISISP STMMSPTGNS PVMHFMPTSF PPQRDDSGCL SIGHKAHMLP  1440
RISTAVGLPP HFQPPPSPPS VVRNMRGGCA AANSVRAGGG AAAAAAAGQA PARSPRSSAP  1500
GTPRSPRAPA TGTPRSRTKA GCTPLSAPSP GAVKAQLDEM MRVDPVAAAA AAAGGGSGMS  1560
ESLAAAAAAA AVAAVAAAPE AALAAAAAAG LIVAEDAGAA VDSPGASGGG NLRRSRREAR  1620
GARGSTLGTA RTGRGGRSRG TDDDDEDYAT DADEDALSSD DGDDEGGGGG GGAGRGGGGG  1680
GGGTTSGEGY VDEDSVLVVR AVRDGVRREI TKSALRKVYH LPINEAAAAL NIGVTVLKKY  1740
CRKFRVPRWP YRKLQSMAKL IESFERYKKN AFSNGDIEGA ADCQDVIDRL LKFREEVYDN  1800
PDKDIDESVK KLRQANFKIE YRQRQGQTQG APPSTLTRSS LNGETPGAAT GVGGAPSSHD  1860
LRRDFETLSV NAASAEVTEP PPA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002954587.1	0.0	RWP-RK domain-containing transcription factor
TrEMBL	D8U7F8	0.0	D8U7F8_VOLCA; RWP-RK domain-containing transcription factor
STRING	XP_002954587.1	0.0	(Volvox carteri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	5e-20	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Vocar.0014s0106.2.p