PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G66990.1 | ||||||||
Common Name | K8A10.6, RKD3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Nin-like | ||||||||
Protein Properties | Length: 277aa MW: 32393 Da PI: 8.9971 | ||||||||
Description | RWP-RK domain-containing protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 84.1 | 1.3e-26 | 157 | 206 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s e++++yF++pi++AAkeL++++T+LK++CR++GI+RWPhRk++sl AT5G66990.1 157 NNMSREMMKQYFYMPITKAAKELNIGVTLLKKRCRELGIPRWPHRKLTSL 206 6899*******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.303 | 142 | 226 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.5E-22 | 158 | 206 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MADQRPLMTW LEANNYESFL QEDIFSFLDQ SLFVDPHSSF IDPFKDFQTQ NWFSLQDSIV 60 NHISTTFAAD HTFLASLDLE AISSTFSLDI SSGWWNENNG NYNNQVEPNL DEISRTNTMG 120 DPNMEQILHE DVNTMKEKTS QKRIIMKRRY REDGVINNMS REMMKQYFYM PITKAAKELN 180 IGVTLLKKRC RELGIPRWPH RKLTSLNALI ANLKDLLGNT KGRTPKSKLR NALELLEMEK 240 KMIEEVPDLE FGDKTKRLRQ ACFKAKYKRR RLFSSSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 267 | 271 | KRRRL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18425139 | 0.0 | ||||
Expression Atlas | AT5G66990 | - | ||||
AtGenExpress | AT5G66990 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G66990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G66990 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026640 | 0.0 | AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_201500.1 | 0.0 | RWP-RK domain-containing protein | ||||
Swissprot | Q9FGD1 | 0.0 | RKD3_ARATH; Protein RKD3 | ||||
TrEMBL | A0A178U8G5 | 0.0 | A0A178U8G5_ARATH; RKD3 | ||||
STRING | AT5G66990.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12180 | 19 | 32 | Representative plant | OGRP567 | 17 | 77 |
Link Out ? help Back to Top | |
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Phytozome | AT5G66990.1 |
Entrez Gene | 836834 |
iHOP | AT5G66990 |
wikigenes | AT5G66990 |
Publications ? help Back to Top | |||
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