PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0007s0384.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | CPP | ||||||||
Protein Properties | Length: 1284aa MW: 128890 Da PI: 5.9879 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 43.1 | 8.5e-14 | 30 | 66 | 4 | 41 |
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k+CnCkk +Clk+YC Cf+ag++Cs+ C C +C N+ + Vocar.0007s0384.2.p 30 KRCNCKKARCLKLYCVCFSAGVYCSD-CACRECLNTLD 66 89************************.********876 PP | |||||||
2 | TCR | 41.9 | 2e-13 | 101 | 138 | 2 | 39 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +kkgC+C++s+C+kkYCeCf a+++Cs +C+Ce+C N Vocar.0007s0384.2.p 101 HKKGCRCRRSRCVKKYCECFDAQVYCSGSCRCEHCLNL 138 79**********************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.0E-12 | 27 | 67 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 27.511 | 28 | 140 | IPR005172 | CRC domain |
Pfam | PF03638 | 9.6E-11 | 30 | 64 | IPR005172 | CRC domain |
SMART | SM01114 | 4.0E-9 | 100 | 141 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.4E-11 | 102 | 137 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 1284 aa Download sequence Send to blast |
MSAIKDHDAF NAANDSAVDI ADFSYTAGIK RCNCKKARCL KLYCVCFSAG VYCSDCACRE 60 CLNTLDNRDL VHAERTKKLA ASPGAFAPKV ELKAEGEMAC HKKGCRCRRS RCVKKYCECF 120 DAQVYCSGSC RCEHCLNLPK GGAPVLAPIP HVSLPPAHGG PSDLLSRFPT ADGADGGPGG 180 VAPITASVAA AAAAATAAAA ALHENTLAVV VNSAAAAGTE LDMGALDPHV GGLRATGRNG 240 VAASGGTLTA HGSLPFATAP SGTGSFLLSL HSGPLEFSGL SFLGNPEAAA AEKLGVGVVM 300 AGEVAATDRD GVLGPRLDAG AFTMGPGKST MPDGSLQALP GGVAVGMEAH VATPIVPSPA 360 LRRPPTSVFT FAGAQAEAVL AAQEQAGAPA NAAAALQSAP DDATTATAAA APLCETGMCA 420 GVPLLAEDGC SNGGGFAAGP AVGAAPPGST TGCSAGGGGE GDGCPRAAAD GEGKAHEHAQ 480 ALRRRISSDP EEDAEALRAG ASRTGPGPPA ALDSLPLMPA ASGTAHAGDP LLHEAGPPAV 540 AAVVATTSTT KLDPAPAAAG AAAAVEPAAA AAPAERPGPT HIGEAAGETA GTAEAPPVPP 600 ELMACSDDGG GTASEEMSAM EAVLAAPLLL LEEPLRAEEL AAQLGLDVPQ RLAARKAAHI 660 LRTLLCMASS TVQLTRSGAV GDSSHRWEQS LSRRGPAASH TQLLASHGLL APWAATTGNA 720 AAKPTVTTAA AATAPSLRAL GGRGQGDQPD QQPDPLHQQQ QPPPHGTLPP QGSCQQQQQH 780 QQHSFLGAAA LPAAMAERHE FVGTTTGGGQ DGCGAKQQDA ATQPGALPAR ILNLPPLHLP 840 PLSFSCVSGG SGTGGAAASG GGGTGGGGGG VRLGYGSYLF SAAGRLTGPE VSAMSGSHVD 900 GNAQEAGTNA GPAAAAGVAV QMAATGTTPT TIMSAISPGP GSRYRGGMAP AVRSTAGHEA 960 GLDSPLGPLR GVSVGAAAMA VGRRPSHDGE QQRLLRRGSR VKRPNSLLAD MELEEGIERL 1020 VDGRLERRRL HGVPTGHMHG RRIHHLQPHL QDQQHPSHRH RAISSSADPP SPKRSRFTAR 1080 GGAWQQGGSG GGGVDRRGGS WCVDDDAAED GQVEGEEEED DEEEQWESCG GREDSEAGRA 1140 SALRVRALSP YAEGQLPGNH QHHSQHHNYG AGLAIEDQYT TGREPTRQSL RSRSKTPRAL 1200 GGLAAPARQV DDDGVADTGH DVGAGRGKTG EELEDEDGGE RWGLATSEGE DSGGNCASEM 1260 EAMQALFDLR TAAAASVAAS AGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 6e-21 | 21 | 138 | 1 | 121 | Protein lin-54 homolog |
5fd3_B | 6e-21 | 21 | 138 | 1 | 121 | Protein lin-54 homolog |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 6e-30 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0007s0384.2.p |