PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0007s0384.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

CPP

Protein Properties

Length: 1284aa MW: 128890 Da PI: 5.9879

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0007s0384.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	43.1	8.5e-14	30	66	4	41
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k+CnCkk +Clk+YC Cf+ag++Cs+ C C +C N+ + Vocar.0007s0384.1.p 30 KRCNCKKARCLKLYCVCFSAGVYCSD-CACRECLNTLD 66 89**********************.******876 PP
2	TCR	41.9	2e-13	101	138	2	39
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +kkgC+C++s+C+kkYCeCf a+++Cs +C+Ce+C N Vocar.0007s0384.1.p 101 HKKGCRCRRSRCVKKYCECFDAQVYCSGSCRCEHCLNL 138 79**********************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.0E-12	27	67	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	27.511	28	140	IPR005172	CRC domain
Pfam	PF03638	9.6E-11	30	64	IPR005172	CRC domain
SMART	SM01114	4.0E-9	100	141	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.4E-11	102	137	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1284 aa Download sequence Send to blast
MSAIKDHDAF NAANDSAVDI ADFSYTAGIK RCNCKKARCL KLYCVCFSAG VYCSDCACRE 60 CLNTLDNRDL VHAERTKKLA ASPGAFAPKV ELKAEGEMAC HKKGCRCRRS RCVKKYCECF 120 DAQVYCSGSC RCEHCLNLPK GGAPVLAPIP HVSLPPAHGG PSDLLSRFPT ADGADGGPGG 180 VAPITASVAA AAAAATAAAA ALHENTLAVV VNSAAAAGTE LDMGALDPHV GGLRATGRNG 240 VAASGGTLTA HGSLPFATAP SGTGSFLLSL HSGPLEFSGL SFLGNPEAAA AEKLGVGVVM 300 AGEVAATDRD GVLGPRLDAG AFTMGPGKST MPDGSLQALP GGVAVGMEAH VATPIVPSPA 360 LRRPPTSVFT FAGAQAEAVL AAQEQAGAPA NAAAALQSAP DDATTATAAA APLCETGMCA 420 GVPLLAEDGC SNGGGFAAGP AVGAAPPGST TGCSAGGGGE GDGCPRAAAD GEGKAHEHAQ 480 ALRRRISSDP EEDAEALRAG ASRTGPGPPA ALDSLPLMPA ASGTAHAGDP LLHEAGPPAV 540 AAVVATTSTT KLDPAPAAAG AAAAVEPAAA AAPAERPGPT HIGEAAGETA GTAEAPPVPP 600 ELMACSDDGG GTASEEMSAM EAVLAAPLLL LEEPLRAEEL AAQLGLDVPQ RLAARKAAHI 660 LRTLLCMASS TVQLTRSGAV GDSSHRWEQS LSRRGPAASH TQLLASHGLL APWAATTGNA 720 AAKPTVTTAA AATAPSLRAL GGRGQGDQPD QQPDPLHQQQ QPPPHGTLPP QGSCQQQQQH 780 QQHSFLGAAA LPAAMAERHE FVGTTTGGGQ DGCGAKQQDA ATQPGALPAR ILNLPPLHLP 840 PLSFSCVSGG SGTGGAAASG GGGTGGGGGG VRLGYGSYLF SAAGRLTGPE VSAMSGSHVD 900 GNAQEAGTNA GPAAAAGVAV QMAATGTTPT TIMSAISPGP GSRYRGGMAP AVRSTAGHEA 960 GLDSPLGPLR GVSVGAAAMA VGRRPSHDGE QQRLLRRGSR VKRPNSLLAD MELEEGIERL 1020 VDGRLERRRL HGVPTGHMHG RRIHHLQPHL QDQQHPSHRH RAISSSADPP SPKRSRFTAR 1080 GGAWQQGGSG GGGVDRRGGS WCVDDDAAED GQVEGEEEED DEEEQWESCG GREDSEAGRA 1140 SALRVRALSP YAEGQLPGNH QHHSQHHNYG AGLAIEDQYT TGREPTRQSL RSRSKTPRAL 1200 GGLAAPARQV DDDGVADTGH DVGAGRGKTG EELEDEDGGE RWGLATSEGE DSGGNCASEM 1260 EAMQALFDLR TAAAASVAAS AGL*

Sequence ? help Back to Top

Protein Sequence Length: 1284 aa Download sequence Send to blast

MSAIKDHDAF NAANDSAVDI ADFSYTAGIK RCNCKKARCL KLYCVCFSAG VYCSDCACRE  60
CLNTLDNRDL VHAERTKKLA ASPGAFAPKV ELKAEGEMAC HKKGCRCRRS RCVKKYCECF  120
DAQVYCSGSC RCEHCLNLPK GGAPVLAPIP HVSLPPAHGG PSDLLSRFPT ADGADGGPGG  180
VAPITASVAA AAAAATAAAA ALHENTLAVV VNSAAAAGTE LDMGALDPHV GGLRATGRNG  240
VAASGGTLTA HGSLPFATAP SGTGSFLLSL HSGPLEFSGL SFLGNPEAAA AEKLGVGVVM  300
AGEVAATDRD GVLGPRLDAG AFTMGPGKST MPDGSLQALP GGVAVGMEAH VATPIVPSPA  360
LRRPPTSVFT FAGAQAEAVL AAQEQAGAPA NAAAALQSAP DDATTATAAA APLCETGMCA  420
GVPLLAEDGC SNGGGFAAGP AVGAAPPGST TGCSAGGGGE GDGCPRAAAD GEGKAHEHAQ  480
ALRRRISSDP EEDAEALRAG ASRTGPGPPA ALDSLPLMPA ASGTAHAGDP LLHEAGPPAV  540
AAVVATTSTT KLDPAPAAAG AAAAVEPAAA AAPAERPGPT HIGEAAGETA GTAEAPPVPP  600
ELMACSDDGG GTASEEMSAM EAVLAAPLLL LEEPLRAEEL AAQLGLDVPQ RLAARKAAHI  660
LRTLLCMASS TVQLTRSGAV GDSSHRWEQS LSRRGPAASH TQLLASHGLL APWAATTGNA  720
AAKPTVTTAA AATAPSLRAL GGRGQGDQPD QQPDPLHQQQ QPPPHGTLPP QGSCQQQQQH  780
QQHSFLGAAA LPAAMAERHE FVGTTTGGGQ DGCGAKQQDA ATQPGALPAR ILNLPPLHLP  840
PLSFSCVSGG SGTGGAAASG GGGTGGGGGG VRLGYGSYLF SAAGRLTGPE VSAMSGSHVD  900
GNAQEAGTNA GPAAAAGVAV QMAATGTTPT TIMSAISPGP GSRYRGGMAP AVRSTAGHEA  960
GLDSPLGPLR GVSVGAAAMA VGRRPSHDGE QQRLLRRGSR VKRPNSLLAD MELEEGIERL  1020
VDGRLERRRL HGVPTGHMHG RRIHHLQPHL QDQQHPSHRH RAISSSADPP SPKRSRFTAR  1080
GGAWQQGGSG GGGVDRRGGS WCVDDDAAED GQVEGEEEED DEEEQWESCG GREDSEAGRA  1140
SALRVRALSP YAEGQLPGNH QHHSQHHNYG AGLAIEDQYT TGREPTRQSL RSRSKTPRAL  1200
GGLAAPARQV DDDGVADTGH DVGAGRGKTG EELEDEDGGE RWGLATSEGE DSGGNCASEM  1260
EAMQALFDLR TAAAASVAAS AGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	6e-21	21	138	1	121	Protein lin-54 homolog
5fd3_B	6e-21	21	138	1	121	Protein lin-54 homolog

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP323	15	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	6e-30	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Vocar.0007s0384.1.p