PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0003s0248.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family GATA
Protein Properties Length: 987aa    MW: 100016 Da    PI: 4.5885
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0003s0248.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.6e-17220249130
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyy 30 
                          C+ Cg+t+Tp+WR+gp g+ktLCnaCG++y
  Vocar.0003s0248.1.p 220 CVECGATQTPQWREGPAGPKTLCNACGVRY 249
                          ****************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd043702.04E-1034148No hitNo description
PROSITE profilePS5103816.55835159IPR001025Bromo adjacent homology (BAH) domain
SMARTSM004399.0E-835159IPR001025Bromo adjacent homology (BAH) domain
PfamPF014267.6E-835156IPR001025Bromo adjacent homology (BAH) domain
PROSITE profilePS5011412.479214249IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-11214270IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.7E-14217252IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.65E-12217254No hitNo description
CDDcd002022.70E-12219269No hitNo description
PfamPF003201.0E-14220249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440220245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    Send to blast
MSGPLQVEFF FSGPPLNANL GASRTDYAGF NLNGVEYKLG DCAYLYPEDD GMPPYVGRIL  60
ACFHDRSGRA ADPHCVEVAW YERRAHLEPD PHGGNWDREV VALEETDTNP IGCISGKAFV  120
FRAGDYEEAC RMAKSVAVDD WLFCRGVYKQ CENCFAPFPD LAEQMEVEDG RRHGKRSQAG  180
ISGHVEGVAD SEEVKRQRVA EEQPAAPVRR TGKLVSGRTC VECGATQTPQ WREGPAGPKT  240
LCNACGVRYV RAQQRANKRA VPAGAARSGY GAGGRQSRTS KAAKAEVASA RAARTAAVVP  300
AAAAGMAPGE EASQRPQRQA ALMAASRTAQ YARTGFFPLD TIDLQQQQQQ HTPDNAAING  360
QIAMHHQHHQ HEADMGDVLT GAFGGVSSAG AAAAGAAAAG PGSPNCSSYD SCGSLQEGVT  420
VEVVVGAADG EAECCGGSVA AVAPAAAAAA TAATVPTYPL LTSSSVGAAA GSLMPTPAQL  480
IGGSGIMLGG VEESVMAVAP VMALPLGEGQ LQSAVPGALQ TASAVAAAVA AAGVLGTASS  540
EFVLECDTTG SGMFFASGLD CQFSGDGVCY PADSHHHHHH HHDDHDQNGV CHHSKTGCVA  600
PAPSGGQCDT AAVYQGTGAV SCVAQVKSVP VSPCVDVDGA GFGCGGFGSV SRMLDGVLAS  660
ARGYGSQLGC GLVGGLDDEY TPLVEVEVDF GLGPASAMGD GSLFDGFDSG TCGADTVEDD  720
DPQHPQSQPL LAQGPALSAS QSQLQLPLPT TLVQQQRQLQ QQHEEQGDYG EGNMGVVDLS  780
AVAARVAAFC PDLAPGTDAR TLLDSLPLLA QTAFLPHGAG SAAAAALAVG DADAISLVAA  840
AAPTSVTVSA ADSAASDEGS CSVGVAVGGA VPGEAVKHLV ALGRQAQCAA TEAMAADAAL  900
QAANQVLEAH QEAARKAGEV AVSKLGLLKD CISTLAGGGE PLVAGEVGGH FIDLHDLGTV  960
GGLGDMAATG CCYSFDAADL LVAVHS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002957265.10.0hypothetical protein VOLCADRAFT_98336
TrEMBLD8UF310.0D8UF31_VOLCA; Uncharacterized protein
STRINGXP_002957265.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-15GATA transcription factor 9