PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s1791.2.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family WRKY
Protein Properties Length: 636aa    MW: 67491.1 Da    PI: 7.0585
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s1791.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12e-29120177259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYG K vkgs++prsYY+C+++gC +kk vers+ d++v+ + Y+g+H h+
  Vocar.0001s1791.2.p 120 SDGWQWRKYGEKLVKGSPNPRSYYKCSHPGCLAKKIVERSEADGNVLSTEYKGDHCHP 177
                          7*******************************************************97 PP
2WRKY1053.9e-33355413159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +dDg++WrKYGqK+vkgs+fpr+YY+Ct+agC+v+k+versaed++ +++tYeg+Hnh+
  Vocar.0001s1791.2.p 355 MDDGFRWRKYGQKQVKGSPFPRAYYKCTHAGCTVRKHVERSAEDETRFVVTYEGTHNHR 413
                          59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-27113179IPR003657WRKY domain
PROSITE profilePS5081128.116114179IPR003657WRKY domain
SuperFamilySSF1182901.14E-24118179IPR003657WRKY domain
SMARTSM007741.0E-33119178IPR003657WRKY domain
PfamPF031068.6E-23121177IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-31351415IPR003657WRKY domain
SuperFamilySSF1182908.76E-28352415IPR003657WRKY domain
PROSITE profilePS5081131.548355415IPR003657WRKY domain
SMARTSM007741.3E-37355414IPR003657WRKY domain
PfamPF031063.8E-26356413IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MDSSLPVPRP SSTRGGAGGA PGASPCHLNP LQALAHHLVN PRGATHDSPV LLPLLQVEAS  60
PTTGIHQLCP PLFQSQSQPA RLPLPIPARM EAASGAEVSR VIKREYEPRV GNGKQSVANS  120
DGWQWRKYGE KLVKGSPNPR SYYKCSHPGC LAKKIVERSE ADGNVLSTEY KGDHCHPAPL  180
TSKASRFRPK PKAEQPAMGT SSLPSVGMLP MSGGGMLPIP DALKSDFPVS NQGPGSLAVE  240
HEDDTETSEA EPAPVLRSAP QDVRPAHAAA NIIRRLRESQ DSPSKRLDLL AAYAEEAERQ  300
LHSNSNSPEA GPCNKRQRTD GAATRARAHC DEDDEGAAAP SGSGTQRVVD MVVNMDDGFR  360
WRKYGQKQVK GSPFPRAYYK CTHAGCTVRK HVERSAEDET RFVVTYEGTH NHRAPTGGRR  420
RSPKDVAEAE DEDFEGDEAE EDSSQPTSPN YGPHGTQPSQ AQHPAASRGR QAAAQQQQQQ  480
QPGSAELGQQ LQLQSSLLAS SVLQQAALTG VLPLLPYNTS LTSEVLASLG LSAEALNGME  540
TLNALNLASV SNLADLSHLL RQHAQIDMAL AAQAQAMDAA SAGWDPLACL ITPRPNVSPA  600
GAQSGQAQAV PSAGTSKQGK PTVAQTRQQV ATTEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25121415177Probable WRKY transcription factor 4
2lex_A1e-25121415177Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001692342.10.0WRKY family transcription factor
TrEMBLA0A2K3DUU00.0A0A2K3DUU0_CHLRE; Uncharacterized protein
STRINGEDP042920.0(Chlamydomonas reinhardtii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.14e-24WRKY DNA-binding protein 25