PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s0773.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C3H
Protein Properties Length: 414aa    MW: 40211.6 Da    PI: 8.6859
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s0773.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.4e-12117138425
                          ---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                          + C+ f++tGtC+yGd+Ck+aH
  Vocar.0001s0773.1.p 117 RVCMKFMQTGTCSYGDNCKYAH 138
                          68******************** PP
2zf-CCCH39.59.5e-13224249227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          kt+lC  f+  G+C+yGd+C+FaHg+
  Vocar.0001s0773.1.p 224 KTRLCEKFMTQGHCPYGDKCTFAHGM 249
                          9***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.6E-9113139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605113141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-7114139IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7115140IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-10117138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.831222250IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-8222249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-10223254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-16223254IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10224249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MFPNPFFAAL GGPAMGGPPM GGPFGAGLNN LGGLPGQGLP GFMGSQGMGG PGMPPGHGMM  60
SGPGMQQGPG MQQGPGMPPL SHGPNGPMVP MTTAHEHQAG GGPGGASRQG GDFLRNRVCM  120
KFMQTGTCSY GDNCKYAHES RGGGGGGGGG GGVAGVQQGQ QGERPGGGGG GGGGGRDRRG  180
GARGGGGGVM SGATDEVHGQ QQQQMMMMGD SLGSGRGKSQ GARKTRLCEK FMTQGHCPYG  240
DKCTFAHGME ELRPAAPRET QQPEPLPLLP PISGPAPPSE PYPAEPRGQS ASAGAAGASG  300
GGGGGGGGGG GGGSGGGAAQ AGKPAAGPQS DGGGGGGAGL SSGGSAKEVT FVDKVRALCG  360
VLAIGNAAAQ AQDKPLALQT AAMSLRNGNA FRENPFADSV ERYIQQQQQQ QQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298313SGGGGGGGGGGGGGGS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1126533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-09C3H family protein