PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g17410.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 583aa    MW: 61942.9 Da    PI: 7.8555
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g17410.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.29.8e-1286111227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C +++rtG+C yG rC+F+H++
  Vang11g17410.2  86 DEADCIYYLRTGFCGYGTRCRFNHPR 111
                     6799********************96 PP
2zf-CCCH29.61.2e-09195215727
                     SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                     ++++rtG Ck+G++Ck++H++
  Vang11g17410.2 195 QYYMRTGSCKFGASCKYHHPR 215
                     59*****************96 PP
3zf-CCCH34.82.8e-11237261327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++ +tG+Ck+G++CkF+H++
  Vang11g17410.2 237 EKECSYYVKTGQCKFGATCKFHHPQ 261
                     679********************97 PP
4zf-CCCH37.44.2e-12402427227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG+Ck+G++C+++H+p
  Vang11g17410.2 402 DQPECHYYMKTGECKFGPSCRYHHPP 427
                     689*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-484111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.85484112IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-986111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-687113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-590111IPR000571Zinc finger, CCCH-type
SMARTSM003560.46193215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.643195216IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7195215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324234262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6235262IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5236261IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-9237261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4240260IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5400427IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.577400428IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9402427IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6403428IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4406426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MERYGRASEG SQSDPSPEWT VAGADAGIEG DSIYIICYSF HDSRFALNNA ECGNNGSRFD  60
LDFANNAESS WQHGLAAAES YPLRPDEADC IYYLRTGFCG YGTRCRFNHP RDRAACVSPI  120
SPLILALCSH WSCGEDWRGV SGARGAACVP GFLIWLSFID SLLHLLTSIF VLVVFNAGGL  180
PYVLVVLHML VVELQYYMRT GSCKFGASCK YHHPRQAAGN ATPVPLNYYG YPLRVGEKEC  240
SYYVKTGQCK FGATCKFHHP QPAGVQVIAP SPVPAVSHLP VPVPSPVYPT VQPQSGPSQQ  300
QYGVLVARPP MLPGSVVQGP YGPMVVSPAM VPFSGWGPYQ APATTPVMPS SSASNVGSTQ  360
LYGITPLPSS AATFTGPYQP SGSSVGPSGA IQKEHPFPER PDQPECHYYM KTGECKFGPS  420
CRYHHPPDKG APKANVILSP VGLPLRPNRI HVGLYIMHSC WTTLYNIHYK CASGSFFRFS  480
YSPSASSLAD MPVAPYPVGS SIGTLAPSSS SSELRPELGA GVSKESVSSR MSSMSTSTGS  540
VGLTLSSVGP ISHSSTQPSA QSSSSSATTS ATTSSTVSHT SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g17410.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510178.10.0zinc finger CCCH domain-containing protein 34
TrEMBLA0A0L9TSM40.0A0A0L9TSM4_PHAAN; Uncharacterized protein
STRINGXP_007154244.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.12e-98C3H family protein