PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g13900.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 1130aa    MW: 126001 Da    PI: 6.6074
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g13900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.94.1e-23126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W +++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  Vang11g13900.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfptldySMQPPA-QELVAKDLHDSTWPFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFI--RDEK 217
                     99*****************************9545444.38************************************************..5688 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  Vang11g13900.1 218 KHLLLGIRRA 227
                     889****997 PP
2Auxin_resp123.91.1e-40252334183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+sdldpvrW+nS+Wr+++
  Vang11g13900.1 252 AAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNIQ 334
                     79******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-43116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100179.33E-20125226No hitNo description
PfamPF023623.3E-21126227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.026126228IPR003340B3 DNA binding domain
SMARTSM010193.0E-22126228IPR003340B3 DNA binding domain
PfamPF065071.2E-35252334IPR010525Auxin response factor
PfamPF023097.0E-99951082IPR033389AUX/IAA domain
PROSITE profilePS5174526.3569961079IPR000270PB1 domain
SuperFamilySSF542771.32E-810091074No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1130 aa     Download sequence    Send to blast
MKVPSNGFLP NSGEGERKPI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQNR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPTLDYSMQ PPAQELVAKD LHDSTWPFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLLAGDSV LFIRDEKKHL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DPVRWKNSQW RNIQVGWDES TAGERPSRVS IWEIEPVVTP  360
FYICPPPFFR PKFPRQPGMP DEESDMENAF KRGMPWLGEE FGMKDASSSI FPGFSLVQWM  420
SMQPNNQLSA TQSGCFPSML PSNTLQGNLG TEDPSKLLSF QPPVLSSPTL QLNKPNLPNQ  480
INQLQQSPVS WPQQQQLQQQ QQQLQQQQQL QQQQLQSLLQ IPMNHLQQQR QQQLPEPQNL  540
PLLQQMPQQL GQQPQKPQQP SQHATLMNNG VVSSNQITGQ FVQPPMAYGQ LQQQQLLSGG  600
IQTQQGIQSA SKNTFPLTSL PHDSQFQQQL DQQANLLRQQ QQQTQLQQSP LQLLQQNLPQ  660
IASQQQPPAT QMLQQNPSEQ QLHLQLLQKL QHQQQQLLST STPLLQSQLL PQQNPHQQNQ  720
QLPLPPPPIS HHQPQQLANN VCSTEKLLNS NNFSSSSLMQ SQQNPMSQSQ NTQKSLTTTR  780
APSTLTDGDA PSCSTSPSTN NCQVSPPNLL KRNQQLPAPL GGSLMVEPTS NLLQDLHSKP  840
DMQNKHELLN LKGPDQLKYK GAITDQLEAS SSGTSYCLDP GNVQQNLPLS NFCMEGDAQS  900
HPRNSLPFDT NLDDLTPDTM LLRGYDSSKD LQNLLSNYGG APRDIETELS TADISSQSFG  960
VPNMPFKPGC SSDVVINETG VLNNSGLRGN QPPRMRTYTK VQKRGSVGRC IDVTRYRGYD  1020
ELRHDLAKMF GIEGQLDPQR TDWKLVYVDH ENDILLVGDD PWDEFVSCVQ SIKILSHSEV  1080
QQMSLDGDLG GNVPIPNQAC SGTESGNAWR GQYEDNSAAS FNRYSRIAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691535545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g13900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428692.10.0PREDICTED: auxin response factor 19
TrEMBLA0A0S3R8C10.0A0A0S3R8C1_PHAAN; Auxin response factor
STRINGGLYMA17G05220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19