PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g13200.1
Common NameLR48_Vigan728s003300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 307aa    MW: 34022.4 Da    PI: 9.3309
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g13200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.71.8e-19173206134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Vang11g13200.1 173 CADCHTTKTPLWRSGPRGPKSLCNACGIRQRKAR 206
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.62E-12166207No hitNo description
SMARTSM004015.1E-19167218IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.69167203IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-15171206IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.67E-13172200No hitNo description
PROSITE patternPS003440173198IPR000679Zinc finger, GATA-type
PfamPF003203.5E-17173206IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MIPAYRHSSV IPLDLNEDQN HELFTPTYHA YPSFSYLSSS YPVLFSPPDQ EDGSHSWEPT  60
KHLSGHEEAE KINPTMGSWD HSVAQSELKV TVCKQKERSE DHEAAAEDGS VKLMSSKMRM  120
MQKMMGSDQT GAYIEDSTVN KFEDEKQPLS PLGTDNSSSN NCSNHSNNTV RVCADCHTTK  180
TPLWRSGPRG PKSLCNACGI RQRKARRAMA AAASGNGTVI FETEKSVKGN KLQKKEKKAR  240
TQGAPQMKKK RKHGVGAKPS QSRNKFGFED LTLRLRKSLA MHQVFPQDEK EAAILLMALS  300
YGLVHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g13200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017410381.10.0PREDICTED: GATA transcription factor 21-like
TrEMBLA0A0L9TG900.0A0A0L9TG90_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R8F50.0A0A0S3R8F5_PHAAN; Uncharacterized protein
STRINGXP_007154661.11e-167(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.16e-30cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]