PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g13110.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 140aa    MW: 15844.4 Da    PI: 9.8728
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g13110.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox391.4e-1235622956
                    HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56
                    +++ LA++l+L++rqV vWFqNrRa+ k
  Vang11g13110.2 35 QKQTLADQLNLKTRQVEVWFQNRRARTK 62
                    789***********************98 PP
2HD-ZIP_I/II77.13e-2534962790
     HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
                     +K++la +L+l++rqv+vWFqnrRARtk+kq+E+d e Lk+++++l++en+rL+ke +eLr +
  Vang11g13110.2 34 VQKQTLADQLNLKTRQVEVWFQNRRARTKLKQTEVDREWLKKQCQNLSDENKRLKKELQELR-A 96
                    59***********************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.1150.104.3E-41014IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2
SMARTSM003890.00722168IPR001356Homeobox domain
SuperFamilySSF466895.56E-103465IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-103457IPR009057Homeodomain-like
PfamPF000465.7E-103562IPR001356Homeobox domain
PROSITE profilePS5007112.1953564IPR001356Homeobox domain
CDDcd000868.62E-73565No hitNo description
PROSITE patternPS0002703962IPR017970Homeobox, conserved site
Gene3DG3DSA:3.90.1150.104.3E-458102IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2
SMARTSM003402.9E-1664107IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-66498IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MEDAEECITG LCLGLGMGGY VPKKGNQKEN RPVVQKQTLA DQLNLKTRQV EVWFQNRRAR  60
TKLKQTEVDR EWLKKQCQNL SDENKRLKKE LQELRALKVG PSPLCIQLSK TATLTMCSSC  120
EKLVKLNEGK NNIELKGTN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15664RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g13110.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-133AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017410384.15e-68PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X1
RefseqXP_017410385.15e-68PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X2
RefseqXP_017410386.15e-68PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X3
SwissprotP466022e-33HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0L9TG711e-66A0A0L9TG71_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R8K61e-66A0A0S3R8K6_PHAAN; Uncharacterized protein
STRINGXP_007154673.12e-52(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.19e-36homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]