PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g13110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 163aa MW: 18877 Da PI: 9.9759 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37.6 | 3.8e-12 | 58 | 85 | 29 | 56 |
HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56 +++ LA++l+L++rqV vWFqNrRa+ k Vang11g13110.1 58 QKQTLADQLNLKTRQVEVWFQNRRARTK 85 789***********************98 PP | |||||||
2 | HD-ZIP_I/II | 76.2 | 5.7e-25 | 58 | 119 | 28 | 90 |
HD-ZIP_I/II 28 rKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +K++la +L+l++rqv+vWFqnrRARtk+kq+E+d e Lk+++++l++en+rL+ke +eLr + Vang11g13110.1 58 QKQTLADQLNLKTRQVEVWFQNRRARTKLKQTEVDREWLKKQCQNLSDENKRLKKELQELR-A 119 8***********************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.004 | 42 | 91 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-10 | 50 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-9 | 58 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.80E-7 | 58 | 88 | No hit | No description |
Pfam | PF00046 | 1.6E-9 | 58 | 85 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 12.195 | 58 | 87 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 62 | 85 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.9E-16 | 87 | 130 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MEDAEECITG LCLGLGMGGY VPKKGNQKEN RPVLIAFLYF VPQGERFMRW FWFHMQVQKQ 60 TLADQLNLKT RQVEVWFQNR RARTKLKQTE VDREWLKKQC QNLSDENKRL KKELQELRAL 120 KVGPSPLCIQ LSKTATLTMC SSCEKLVKLN EGKNNIELKG TN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 87 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g13110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-133 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017410384.1 | 8e-80 | PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X1 | ||||
Refseq | XP_017410385.1 | 8e-80 | PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X2 | ||||
Refseq | XP_017410386.1 | 8e-80 | PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X3 | ||||
Swissprot | P46602 | 1e-32 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A0L9TG71 | 2e-78 | A0A0L9TG71_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R8K6 | 2e-78 | A0A0S3R8K6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007154673.1 | 1e-59 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 4e-35 | homeobox-leucine zipper protein 3 |
Publications ? help Back to Top | |||
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