PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g12510.1 | ||||||||
Common Name | LR48_Vigan01g237400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 188aa MW: 21430.9 Da PI: 9.3303 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.3 | 1.5e-09 | 17 | 67 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas.kapskKlsKaeiLekAveYIksLq 55 + +Er+RR +++ ++L +++P+++ k+++ ls + L +A YIk+L+ Vang11g12510.1 17 KTIERNRRIHMKALCFKLVSIIPSQYlKPTKDMLSQQDQLDLAATYIKHLR 67 689*********************662555555****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.299 | 11 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.26E-4 | 11 | 71 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-9 | 15 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-9 | 15 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-6 | 17 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MKNTNTTVTA SSKLDRKTIE RNRRIHMKAL CFKLVSIIPS QYLKPTKDML SQQDQLDLAA 60 TYIKHLRERI EKLKGEKEQA MKMMRTTQTN NGIFNIDADQ LPLLEIKELG SGIEVMLISG 120 VNKNFMLYEV ISVLEEEGVE VVTANFSTVD NKIFYTVHAQ VKISRVGVEP TRVYQKLQEL 180 IAPLESW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g12510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434702.1 | 1e-137 | PREDICTED: uncharacterized protein LOC108341536 | ||||
TrEMBL | A0A0L9TQF4 | 1e-135 | A0A0L9TQF4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155415.1 | 1e-111 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6849 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 5e-27 | bHLH family protein |
Publications ? help Back to Top | |||
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