PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g11680.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 363aa MW: 38808.3 Da PI: 7.1513

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g11680.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.6e-12	178	223	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Vang11g11680.1 178 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 223 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.79E-17	171	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.98E-13	171	227	No hit	No description
PROSITE profile	PS50888	17.39	173	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-16	175	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-9	178	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MQPCSREMQG ANNNSLFNHG GNNQQQIHFD ATSNEDFLKQ MLSNLPSSSP WTLDPKHNPL 60 WDPNSDETTP ENNVVFPYDL EQANLASKFR NHQITDDKAS ALMLQHHHQL LLSSAAANSP 120 ILQMPVSSLN DVVHASSFKS PASGQSFGAS APATGGGAGS GQPKQRVRAR RGQATDPHSI 180 AERLRRERIA ERMKALQELV PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV 240 APLVADISSE GGPDCVQQKR NNTNGNSNGN HASSNDTLTT TEQQVAKLME EDMGSAMQYL 300 QGKGLCLMPI SLATAISKAT CHTRNPFTNG DGPSSPGISA LTLHSSTLSN GLVKDTASVS 360 KS*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MQPCSREMQG ANNNSLFNHG GNNQQQIHFD ATSNEDFLKQ MLSNLPSSSP WTLDPKHNPL  60
WDPNSDETTP ENNVVFPYDL EQANLASKFR NHQITDDKAS ALMLQHHHQL LLSSAAANSP  120
ILQMPVSSLN DVVHASSFKS PASGQSFGAS APATGGGAGS GQPKQRVRAR RGQATDPHSI  180
AERLRRERIA ERMKALQELV PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV  240
APLVADISSE GGPDCVQQKR NNTNGNSNGN HASSNDTLTT TEQQVAKLME EDMGSAMQYL  300
QGKGLCLMPI SLATAISKAT CHTRNPFTNG DGPSSPGISA LTLHSSTLSN GLVKDTASVS  360
KS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	187	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g11680.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017418165.1	0.0	PREDICTED: transcription factor bHLH82-like isoform X1
Swissprot	Q9ZUG9	5e-84	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0S3R6B2	0.0	A0A0S3R6B2_PHAAN; Uncharacterized protein
STRING	XP_007154897.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-64	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]