PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g10140.1
Common NameLR48_Vigan01g279900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 325aa    MW: 36859.5 Da    PI: 4.4601
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g10140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.5e-2082135356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++++q++ Le+ Fe+++++  e++++LAk lgL+ rqV +WFqNrRa++k
  Vang11g10140.1  82 KKRRLSPNQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWK 135
                     56689************************************************9 PP
2HD-ZIP_I/II128.92e-4181173193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls +qv++LE+sFeee+kLeperK++la++Lglqprqva+WFqnrRAR+ktkqlEkdye L+++y++lk++ e L ke+++L++e+++
  Vang11g10140.1  81 EKKRRLSPNQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEILHESYESLKANYEILLKEKDKLKSEVAH 173
                     69**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-1969139IPR009057Homeodomain-like
PROSITE profilePS5007117.71877137IPR001356Homeobox domain
SMARTSM003891.7E-1980141IPR001356Homeobox domain
PfamPF000464.3E-1782135IPR001356Homeobox domain
CDDcd000864.08E-1882138No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2084144IPR009057Homeodomain-like
PRINTSPR000311.3E-5108117IPR000047Helix-turn-helix motif
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5117133IPR000047Helix-turn-helix motif
PfamPF021831.3E-14137178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAAGRAFSDI TAFLRNQTAP PTSQPLDSLF LSSSTAPFLG SRSMMSFEGE GGKGCNGSFF  60
RAFDIDENGD ECMDEYFHQP EKKRRLSPNQ VQFLEKSFEE ENKLEPERKT KLAKDLGLQP  120
RQVAIWFQNR RARWKTKQLE KDYEILHESY ESLKANYEIL LKEKDKLKSE VAHLSEKVLA  180
REKEEGQLKQ AESGTKRLQE QDQEPPQRPV LDSVSEGEGS KVSCVVGGCK QEDISSARSD  240
ILDSDSPHYT DGVHSAVLEH GDSSYVFEPD QSDMSQDEED NLSKSLYPSY LFPKLEDADY  300
SDPTESSCNF GFSEEDHGLW NWEY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g10140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419080.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A0L9TRN40.0A0A0L9TRN4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R7P10.0A0A0S3R7P1_PHAAN; Uncharacterized protein
STRINGXP_007155341.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-46homeobox 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]