PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g08920.3
Common NameLR48_Vigan01g266000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 309aa    MW: 34664 Da    PI: 8.8943
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g08920.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP140.71.1e-43642083135
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec....eaesssssasns 85 
                      k+drhski T++g+RdRR+Rls+e+a+rfF Lqd+LGfdk+skt+eWLl+qak +ik+l++         s+ss sec    + ++ ++s+ n+
  Vang11g08920.3  64 CKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREknsvggakSASSTSECegvsSLDEVVVSGVNE 158
                     69*************************************************************99999877666667786664333334444445 PP

             TCP  86 ssgkaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                     +++++ ++ + + ++  ++++++ ++kesr+kar+rarert ekmr++ +
  Vang11g08920.3 159 EQERQTPNMKRRTSKVCRKSAFNTIDKESREKARERARERTIEKMRTRRV 208
                     555555555555666666666799999*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.52165123IPR017887Transcription factor TCP subgroup
PfamPF036344.7E-4465205IPR005333Transcription factor, TCP
PROSITE profilePS5137011.341185202IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
LSFLQSFDEN IFLEHHHDFL LLHPSLADPG FSKNLHVAPE IPATPSFGQG GAAPMDHTTR  60
KRSCKRDRHS KINTARGLRD RRMRLSLEVA KRFFGLQDML GFDKASKTVE WLLNQAKVEI  120
KQLAREKNSV GGAKSASSTS ECEGVSSLDE VVVSGVNEEQ ERQTPNMKRR TSKVCRKSAF  180
NTIDKESREK ARERARERTI EKMRTRRVLA ADASNLNRLS SWNPFETVED SAGTQSQSVN  240
HPSLDAHLPE AEEPTSHAKE HLEDIARHED NSLVIMNKWS PTMIFNSLNN SAILHEVSSI  300
SSIIQKMA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g08920.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017431553.10.0PREDICTED: transcription factor DICHOTOMA
TrEMBLA0A0L9TSH00.0A0A0L9TSH0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R7530.0A0A0S3R753_PHAAN; Uncharacterized protein
STRINGXP_007155147.11e-162(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-26TCP domain protein 12
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]