PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g08920.1
Common NameLR48_Vigan01g266000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 370aa    MW: 41684.5 Da    PI: 7.48
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g08920.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP140.11.7e-431172613135
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec....eaesssssasns 85 
                      k+drhski T++g+RdRR+Rls+e+a+rfF Lqd+LGfdk+skt+eWLl+qak +ik+l++         s+ss sec    + ++ ++s+ n+
  Vang11g08920.1 117 CKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREknsvggakSASSTSECegvsSLDEVVVSGVNE 211
                     69*************************************************************99999877666667786664333334444445 PP

             TCP  86 ssgkaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                     +++++ ++ + + ++  ++++++ ++kesr+kar+rarert ekmr++ +
  Vang11g08920.1 212 EQERQTPNMKRRTSKVCRKSAFNTIDKESREKARERARERTIEKMRTRRV 261
                     555555555555666666666799999*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.2E-44118258IPR005333Transcription factor, TCP
PROSITE profilePS5136933.521118176IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.341238255IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MYSSNTSLNG NDLLSYPSQP FCFRPFSFES NPTNSSKDQS NSNYALPPPL PPPLSFLQSF  60
DENIFLEHHH DFLLLHPSLA DPGFSKNLHV APEIPATPSF GQGGAAPMDH TTRKRSCKRD  120
RHSKINTARG LRDRRMRLSL EVAKRFFGLQ DMLGFDKASK TVEWLLNQAK VEIKQLAREK  180
NSVGGAKSAS STSECEGVSS LDEVVVSGVN EEQERQTPNM KRRTSKVCRK SAFNTIDKES  240
REKARERARE RTIEKMRTRR VLAADASNLN RLSSWNPFET VEDSAGTQSQ SVNHPSLDAH  300
LPEAEEPTSH AKEHLEDIAR HEDNSLVIMN KWSPTMIFNS LNNSAILHEH QFAEFQSLGK  360
PWETYNDHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g08920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017431553.10.0PREDICTED: transcription factor DICHOTOMA
TrEMBLA0A0L9TSH00.0A0A0L9TSH0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R7530.0A0A0S3R753_PHAAN; Uncharacterized protein
STRINGXP_007155147.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.18e-26TCP domain protein 12
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]