PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g06930.1
Common NameLR48_Vigan01g222200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 359aa    MW: 38089.4 Da    PI: 6.6801
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g06930.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.71.2e-3588187297
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg 88 
                      +++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ +++ai+e+tgt++ +a ++         + ss +++     g
  Vang11g06930.1  88 SPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHSEQAIIEATGTGTVPAIAVsvggalkiPTTSSANQNR----G 178
                     5799************************************************************88888444333332211111111111....1 PP

             TCP  89 kaaksaaks 97 
                     ++ +s++k+
  Vang11g06930.1 179 EEGASNKKR 187
                     111111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-2993179IPR005333Transcription factor, TCP
PROSITE profilePS5136926.15794148IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MASNQEEQDM DQDQDGGTTD LSTSDVDADK ALSQSTNLNG LQQHFQDKAI AFQALPLKNE  60
PTDSDPDPDP NAPNPPPPLP TMQLQLKSPR RSSTKDRHTK VEGRGRRIRI PATCAARIFQ  120
LTRELGHKSD GETVRWLLEH SEQAIIEATG TGTVPAIAVS VGGALKIPTT SSANQNRGEE  180
GASNKKRKRP SNSEFVDIND TVSQTSGLAP VQVPQGLVPV WAVSNPSMVV PANTFWMIPQ  240
AATTRNPLGG VTGPSSHQPQ IWALSPSVLN VAARPISPVV TTTNIPEAWS VMTACCNGSN  300
SAAVSTSTVG ARSSTNSSMA PSVPSSATKT QTLRDFSLQI YDKQELQFLG RSGPNANP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g06930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428863.10.0PREDICTED: transcription factor TCP9-like
SwissprotO646473e-72TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A0L9TQB20.0A0A0L9TQB2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R6020.0A0A0S3R602_PHAAN; Uncharacterized protein
STRINGXP_007155572.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-74TCP family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]