PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g06450.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | YABBY | ||||||||
Protein Properties | Length: 213aa MW: 23896.3 Da PI: 7.9678 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 132.3 | 6.1e-41 | 16 | 176 | 5 | 170 |
YABBY 5 ssseqvCy..vqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 + s+q+ y + f ++ vsvP tslfk+vtvrCGhCt+ll vn++ +++ hl++s+ + ++ l+ + +++ + s+s++ Vang11g06450.2 16 FLSHQIIYhfFHSCFSPSMFQVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLVPSPTQFHLGHSFFSPSHNLLEEIPNPSPNFLMNQANLSASNE 110 56677766336888999***********************************************9998666665555555555555555554444 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + +e+pr+p ++r + vP + ++eiqrik+ nPdi+hreafsaaaknWahfP+ihfgl Vang11g06450.2 111 FSLPARTAADELPRPPIINR-----RPVPLVEEK--RDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGL 176 43335666777786555444.....447776665..9**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.2E-39 | 26 | 176 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MPTSSPTRYS SLIFFFLSHQ IIYHFFHSCF SPSMFQVSVP CTSLFKTVTV RCGHCTNLLP 60 VNMRGLLVPS PTQFHLGHSF FSPSHNLLEE IPNPSPNFLM NQANLSASNE FSLPARTAAD 120 ELPRPPIINR RPVPLVEEKR DEIQRIKSVN PDITHREAFS AAAKNWAHFP HIHFGLMPDQ 180 TVKKTNVCQQ EGEEVLMKDG FYASANVGVS PY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g06450.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-146 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344763.1 | 1e-114 | YABBY protein FILa | ||||
Refseq | XP_028209668.1 | 1e-114 | protein YABBY 4-like isoform X1 | ||||
Swissprot | O22152 | 3e-53 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
Swissprot | Q01JG2 | 6e-53 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 6e-53 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A0S3R5T6 | 1e-138 | A0A0S3R5T6_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA17G14710.1 | 1e-113 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-50 | YABBY family protein |