PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g02850.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 296aa    MW: 33122.5 Da    PI: 7.5763
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g02850.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.13.4e-20185219135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Vang11g02850.1 185 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 219
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.048179215IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-18179232IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-14182221No hitNo description
Gene3DG3DSA:3.30.50.103.4E-17183219IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.03E-13184216No hitNo description
PfamPF003207.3E-18185219IPR000679Zinc finger, GATA-type
PROSITE patternPS003440185210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
LLPTLFTFQT FYHYISHPHS TSSFYFSALS LSLYPFLNPN TPTSHTIASP SHTTNPIIMH  60
RCCGNSQGHV MGTCTCTMLH TETNSYSILF SMPNTHAPYY DYEHEVYSSY TPSPSSVDCT  120
LSLGTPSTRF TEGEELRNRH EPRSSVTNFR WDLLQSKHTT QSQTNKSTRA TNAASNNDPL  180
LARRCANCDT TSTPLWRNGP RGPKSLCNAC GIRYKKEERR ASAAAATSAA VPGSVMESSR  240
SYGNQSSSWY SHSQMGNELR FMEDSDDRDS ENGIPFFSWN LNVPDRTSMV HDYTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g02850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430125.11e-178PREDICTED: GATA transcription factor 18-like isoform X1
RefseqXP_017430133.11e-178PREDICTED: GATA transcription factor 18-like isoform X2
TrEMBLA0A0S3R4R81e-177A0A0S3R4R8_PHAAN; Uncharacterized protein
STRINGXP_007156047.11e-145(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41053459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.13e-48GATA family protein