PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang11g02060.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 191aa MW: 21245.9 Da PI: 7.1632 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.1 | 1.5e-08 | 3 | 27 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ Vang11g02060.2 3 FKTKLCCKFRA-GTCPYITNCNFAHS 27 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0035 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.84 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.55E-7 | 2 | 33 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-14 | 2 | 35 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-6 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MFFKTKLCCK FRAGTCPYIT NCNFAHSIEE LRRPPPNWQE IVAAHEEEKA VMAEPREEFQ 60 IPTVGSSTFA GDTMQRYVFS SNKYRFSHSS YSDMVITELH RYGGGLMEGE SRDGVSVVGC 120 DTNKGAASKA SADNVVAAVT PVAHSDVYHI GVPSQRPSIV IQRPGQRTHQ KWKGPDKISR 180 IYGDWIDDIE * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang11g02060.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412251.1 | 1e-61 | PREDICTED: zinc finger CCCH domain-containing protein 12 | ||||
Refseq | XP_017412252.1 | 1e-61 | PREDICTED: zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A1R3JEQ5 | 1e-82 | A0A1R3JEQ5_9ROSI; Zinc finger, CCCH-type | ||||
STRING | GSMUA_Achr5P03440_001 | 2e-66 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35430.1 | 1e-37 | C3H family protein |